Pre_GI: BLASTP Hits

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Query: NC_008544:348500:350119 Burkholderia cenocepacia HI2424 chromosome 3, complete sequence

Start: 350119, End: 350772, Length: 654

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008062:370902:372299372299372952654Burkholderia cenocepacia AU 1054 chromosome 3, complete sequencetranscriptional regulator, TetR family4e-112403
NC_010512:734834:736231736231736884654Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, TetR family1e-109395
NC_007509:1383013:138503413850341385687654Burkholderia sp. 383 chromosome 3, complete sequencetranscriptional regulator, TetR family4e-98357
NC_009254:23000:259202592026573654Burkholderia vietnamiensis G4 chromosome 3, complete sequenceTetR family transcriptional regulator1e-78291
NC_008392:542000:557056557056557682627Burkholderia cepacia AMMD chromosome 3, complete sequencetranscriptional regulator, TetR family4e-78290
NC_010557:274945:287751287751288377627Burkholderia ambifaria MC40-6 chromosome 3, complete sequencetranscriptional regulator, TetR family4e-77287
NC_012660:5242392:526310052631005263726627Pseudomonas fluorescens SBW25 chromosome, complete genomeputative tetR family transcriptional regulator4e-56217
NC_010506:537833:555196555196555801606Shewanella woodyi ATCC 51908, complete genometranscriptional regulator, TetR family1e-28126
NC_008228:816000:837355837355837951597Pseudoalteromonas atlantica T6c, complete genometranscriptional regulator, TetR family3e-1995.1
NC_016894:3935161:395446439544643955075612Acetobacterium woodii DSM 1030 chromosome, complete genometranscriptional regulator TetR family1e-1376.6
NC_010572:33724:520805208052712633Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative TetR-family transcriptional regulator2e-1375.9
NC_013729:2133294:214409021440902144734645Kribbella flavida DSM 17836, complete genometranscriptional regulator, TetR family2e-1272.8
NC_015063:122000:128714128714129406693Rahnella sp. Y9602 plasmid pRAHAQ02, complete sequenceTetR family transcriptional regulator7e-1270.5
NC_014210:5309121:531665153166515317286636Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, TetR family2e-1169.3
NC_013209:2759160:277140327714032772044642Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator TetR4e-1168.2
NC_015957:8677395:868260586826058683288684Streptomyces violaceusniger Tu 4113 chromosome, complete genomeregulatory protein TetR4e-1168.2
NC_012912:2426520:243471224347122435335624Dickeya zeae Ech1591, complete genometranscriptional regulator, TetR family5e-1167.8
NC_015064:151607:153750153750154481732Acidobacterium sp. MP5ACTX9 chromosome, complete genomeregulatory protein TetR3e-1065.5
NC_008253:3941938:396844639684463969285840Escherichia coli 536, complete genomeputative transcription regulator protein2e-0962.4
NC_014500:2402881:242317224231722423798627Dickeya dadantii 3937 chromosome, complete genomeputative DNA-binding transcriptional regulatory family of the TetR family3e-0962
NC_007946:4779745:480969748096974810536840Escherichia coli UTI89, complete genomeUidR transriptional regulator3e-0962
NC_016002:2453919:247043024704302471047618Pseudogulbenkiania sp. NH8B, complete genomeTetR family transcriptional regulator7e-0960.8
NC_008700:2788363:280763428076342808254621Shewanella amazonensis SB2B, complete genomeputative transcriptional regulator, TetR family7e-0960.5
NC_014117:2608000:262618526261852626817633Burkholderia sp. CCGE1002 chromosome chromosome 1, completetranscriptional regulator, TetR family1e-0860.1
NC_009092:1504363:152507015250701525681612Shewanella loihica PV-4, complete genometranscriptional regulator, TetR family2e-0859.7
NC_010508:1206498:122332512233251223957633Burkholderia cenocepacia MC0-3 chromosome 1, complete sequencetranscriptional regulator, TetR family2e-0859.3
NC_020126:7661551:768145276814527682090639Myxococcus stipitatus DSM 14675, complete genomeTetR family transcriptional regulator1e-0757
NC_010694:1966676:196889219688921969524633Erwinia tasmaniensis, complete genomeTetR-family transcriptional regulator1e-0756.6
NC_014541:2978500:299438229943822994996615Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, TetR family1e-0756.2
NC_014218:1663486:166664816666481667313666Arcanobacterium haemolyticum DSM 20595 chromosome, complete genometranscriptional regulator, TetR family1e-0756.2
NC_011666:1572487:157707315770731577708636Methylocella silvestris BL2, complete genometranscriptional regulator, TetR family2e-0756.2
NC_013131:7530000:753349175334917534183693Catenulispora acidiphila DSM 44928, complete genometranscriptional regulator, TetR family2e-0755.8
NC_007492:3462929:349938234993823500011630Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, TetR family2e-0755.5
NC_011000:1262324:129188312918831292545663Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein4e-0755.1
NC_012792:627500:631815631815632462648Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, TetR family5e-0754.7
NC_016048:2907702:300353030035303004213684Oscillibacter valericigenes Sjm18-20, complete genomeputative TetR family transcriptional regulator7e-0754.3
NC_010511:7024412:702935870293587030014657Methylobacterium sp. 4-46 chromosome, complete genomeTetR family transcriptional regulator8e-0753.9
NC_007954:1494291:149868114986811499301621Shewanella denitrificans OS217, complete genomeregulatory protein, TetR8e-0753.9
NC_011663:1627220:163153716315371632163627Shewanella baltica OS223 chromosome, complete genomeTetR family transcriptional regulator1e-0653.5
NC_008577:1489643:151097015109701511590621Shewanella sp. ANA-3 chromosome 1, complete sequencetranscriptional regulator, TetR family1e-0653.5
NC_013406:3650300:365940836594083660070663Paenibacillus sp. Y412MC10 chromosome, complete genomeTetR family transcriptional regulator1e-0653.1
NC_016113:887582:9033959033959044771083Streptomyces cattleya NRRL 8057 plasmid pSCAT, complete sequencelactone-dependent transcriptional regulator1e-0653.1
NC_008800:2127918:213056121305612131229669Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,TetR family transcriptional regulator2e-0652.8
NC_015589:3340500:335968733596873360313627Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein TetR2e-0652.4
NC_014168:869746:906042906042906671630Segniliparus rotundus DSM 44985 chromosome, complete genomeTetR family transcriptional regulator3e-0652
NC_008786:18688:243492434924993645Verminephrobacter eiseniae EF01-2, complete genometranscriptional regulator, TetR family3e-0652
NC_002927:506183:514187514187514810624Bordetella bronchiseptica RB50, complete genomeputative TetR-family transcriptional regulator4e-0651.6
NC_006513:286549:292005292005292622618Azoarcus sp. EbN1, complete genomeTetR-family transcriptional regulator4e-0651.6
NC_005126:2063667:208044220804422081116675Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein4e-0651.6
NC_015976:2023540:205252120525212052832312Sphingobium sp. SYK-6, complete genomeputative TetR family transcriptional regulator4e-0651.6
NC_008268:6149576:615238661523866153054669Rhodococcus sp. RHA1, complete genomeprobable transcriptional regulator, TetR family5e-0651.2
NC_014831:1843835:186181618618161862391576Thermaerobacter marianensis DSM 12885 chromosome, complete genomeregulatory protein TetR7e-0650.8
NC_015422:3366500:336988733698873370549663Alicycliphilus denitrificans K601 chromosome, complete genomeTetR family transcriptional regulator7e-0650.8