Pre_GI: BLASTP Hits

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Query: NC_008261:3014373:3023563 Clostridium perfringens ATCC 13124, complete genome

Start: 3023563, End: 3024732, Length: 1170

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003366:2788268:2800923280092328020921170Clostridium perfringens str. 13, complete genomehypothetical protein0793
NC_008262:2649289:2665378266537826665471170Clostridium perfringens SM101, complete genomeamidohydrolase-like protein0786
NC_010723:173280:2095672095672107271161Clostridium botulinum E3 str. Alaska E43, complete genomeamidohydrolase2e-129462
NC_010674:192951:2077502077502089101161Clostridium botulinum B str. Eklund 17B, complete genomeamidohydrolase2e-122439
NC_015425:2690448:2690448269044826915991152Clostridium botulinum BKT015925 chromosome, complete genomeputative amidohydrolase1e-85317
NC_015687:303810:3512853512853524271143Clostridium acetobutylicum DSM 1731 chromosome, complete genomemetal-dependent amidohydrolase2e-80299
NC_003030:303812:3512893512893524311143Clostridium acetobutylicum ATCC 824, complete genomeMetal-dependent amidohydrolase2e-80299
NC_004193:375416:5983345983345994971164Oceanobacillus iheyensis HTE831, complete genomehypothetical protein1e-46187
NC_004193:375416:375416375416675301299886Oceanobacillus iheyensis HTE831, complete genome4e-44179
NC_018704:2417902:2434082243408224352901209Amphibacillus xylanus NBRC 15112, complete genomepeptidase M20 family protein5e-39162
NC_009342:841500:8525518525518536901140Corynebacterium glutamicum R chromosome, complete genomehypothetical protein8e-38158
NC_014314:576465:6054636054636066531191Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completeamidohydrolase3e-37156
NC_004557:2607073:2616689261668926178641176Clostridium tetani E88, complete genomeamidohydrolase1e-36154
NC_016641:2773757:2796677279667727978971221Paenibacillus terrae HPL-003 chromosome, complete genomeamidohydrolase2e-36153
NC_010718:2860096:2875975287597528771531179Natranaerobius thermophilus JW/NM-WN-LF, complete genomeamidohydrolase1e-34147
NC_014318:7821227:7822402782240278237241323Amycolatopsis mediterranei U32 chromosome, complete genomeAma/HipO/HyuC family hydrolase4e-30132
NC_017186:7822448:7822448782244878237701323Amycolatopsis mediterranei S699 chromosome, complete genomeAma/HipO/HyuC family hydrolase4e-30132
NC_020210:3341976:3377439337743933788421404Geobacillus sp. GHH01, complete genomeaminobenzoyl-glutamate utilization protein B5e-21102
NC_005126:4333767:4391036439103643924841449Photorhabdus luminescens subsp. laumondii TTO1, complete genomeaminobenzoyl-glutamate utilization protein B4e-2099.4
NC_019973:5716453:5728979572897957304241446Mesorhizobium australicum WSM2073, complete genomeamidohydrolase1e-1998.2
NC_015675:6342164:6354690635469063561351446Mesorhizobium opportunistum WSM2075 chromosome, complete genomeamidohydrolase1e-1998.2
NC_014923:5787493:5800019580001958014641446Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeamidohydrolase1e-1998.2
NC_007509:1383013:5860586072781419Burkholderia sp. 383 chromosome 3, complete sequencePeptidase M20D, amidohydrolase8e-2098.2
NC_007509:3668:5860586072781419Burkholderia sp. 383 chromosome 3, complete sequencePeptidase M20D, amidohydrolase8e-2098.2
NC_015726:1813961:1828464182846418298881425Cupriavidus necator N-1 chromosome 1, complete sequenceaminobenzoyl-glutamate utilization protein B3e-1892.8
NC_015726:1813961:1823379182337918248751497Cupriavidus necator N-1 chromosome 1, complete sequenceaminobenzoyl-glutamate utilization protein B5e-1892.4
NC_015563:4414854:4436842443684244382691428Delftia sp. Cs1-4 chromosome, complete genomeamidohydrolase2e-1790.5
NC_018531:2085939:2105492210549221069791488Arthrobacter sp. Rue61a chromosome, complete genomeaminobenzoyl-glutamate utilization proteinB3e-1790.1
NC_015726:1813961:1824872182487218263021431Cupriavidus necator N-1 chromosome 1, complete sequenceaminobenzoyl-glutamate utilization protein B4e-1685.9
NC_009328:3322802:3349832334983233512441413Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeaminobenzoyl-glutamate utilization protein B2e-1583.6
NC_015136:2282488:2301323230132323027441422Burkholderia sp. CCGE1001 chromosome 1, complete sequenceamidohydrolase5e-1582.4
NC_014011:1760793:1789884178988417911941311Aminobacterium colombiense DSM 12261 chromosome, complete genomeamidohydrolase9e-1581.6
NC_013850:2182337:2242620224262022442031584Klebsiella variicola At-22 chromosome, complete genomeamidohydrolase7e-1478.6
NC_015578:3011133:3029211302921130306471437Treponema primitia ZAS-2 chromosome, complete genomeaminobenzoyl-glutamate utilization protein B5e-1169.3
NC_015703:4531578:4533486453348645351621677Runella slithyformis DSM 19594 chromosome, complete genomepeptidase dimerization domain-containing protein2e-1067.4
NC_007168:454000:4541134541134552941182Staphylococcus haemolyticus JCSC1435, complete genomehypothetical protein4e-0962.8
NC_014328:680085:6921286921286933121185Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative amidohydrolase6e-0755.5
NC_008529:197272:2153542153542165411188Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeMetal-dependent amidase/aminoacylase/carboxypeptidase8e-0755.1
NC_008054:201075:2235012235012246881188Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeAminoacylase8e-0755.1