Pre_GI: BLASTP Hits

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Query: NC_008228:4696338:4709833 Pseudoalteromonas atlantica T6c, complete genome

Start: 4709833, End: 4710468, Length: 636

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015556:819503:819503819503820162660Pseudomonas fulva 12-X chromosome, complete genometranscriptional regulator, TetR family4e-23107
NC_017150:2244950:227421622742162274869654Acetobacter pasteurianus IFO 3283-01-42C, complete genometranscriptional regulator TetR4e-1994.7
NC_017146:2339848:236911423691142369767654Acetobacter pasteurianus IFO 3283-26, complete genometranscriptional regulator TetR4e-1994.7
NC_017125:2339806:236907223690722369725654Acetobacter pasteurianus IFO 3283-22, complete genometranscriptional regulator TetR4e-1994.7
NC_017121:2337168:236643423664342367087654Acetobacter pasteurianus IFO 3283-07, complete genometranscriptional regulator TetR4e-1994.7
NC_017111:2337181:236644723664472367100654Acetobacter pasteurianus IFO 3283-32, complete genometranscriptional regulator TetR4e-1994.7
NC_017108:2337163:236642923664292367082654Acetobacter pasteurianus IFO 3283-12, complete genometranscriptional regulator TetR4e-1994.7
NC_017100:2339826:236909223690922369745654Acetobacter pasteurianus IFO 3283-03, complete genometranscriptional regulator TetR4e-1994.7
NC_013209:2337204:236647023664702367123654Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator TetR4e-1994.7
NC_015376:2241000:224550722455072246205699Burkholderia gladioli BSR3 chromosome chromosome 2, completeTetR family transcriptional regulator4e-1684.7
NC_016816:2953530:298857429885742989209636Pantoea ananatis LMG 5342, complete genomeHTH-type transcriptional regulator RutR1e-1479.7
NC_007384:1086025:111171911117191112357639Shigella sonnei Ss046, complete genomeputative tet operon regulator2e-1479.3
NC_011740:1189455:119515711951571195795639Escherichia fergusonii ATCC 35469, complete genomeDNA-binding transcriptional regulator of the alternative pyrimidine degradation pathway2e-1479.3
NC_020063:2785652:279097727909772791615639Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator9e-1477
NC_009436:1679265:169231516923151692953639Enterobacter sp. 638, complete genomeTetR family transcriptional regulator3e-1375.5
NC_015563:4383000:440362344036234404303681Delftia sp. Cs1-4 chromosome, complete genomeTetracycline transcriptional regulator YcdC domain-containing protein3e-1375.1
NC_008800:2127918:213056121305612131229669Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,TetR family transcriptional regulator7e-1373.9
NC_015224:2061951:206528820652882065869582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,TetR family transcriptional regulator2e-1272.4
NC_010102:1979742:200090520009052001543639Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-1271.2
NC_012125:2646792:266813126681312668769639Salmonella enterica subsp. enterica serovar Paratyphi C straintranscriptional regulator4e-1271.2
NC_011147:1763681:178636117863611786999639Salmonella enterica subsp. enterica serovar Paratyphi A strtranscriptional regulator6e-1270.9
NC_006511:1770000:179117817911781791816639Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative transcriptional regulator6e-1270.9
NC_017904:1725180:174104217410421741812771Mycobacterium sp. MOTT36Y chromosome, complete genomeTetR family transcriptional regulator1e-0860.1
NC_015589:2049328:206850520685052069101597Desulfotomaculum ruminis DSM 2154 chromosome, complete genomeregulatory protein TetR1e-0860.1
NC_009328:2905000:290693829069382907564627Geobacillus thermodenitrificans NG80-2 chromosome, complete genometranscriptional regulator1e-0859.7
NC_006510:2910000:291071129107112911337627Geobacillus kaustophilus HTA426, complete genometranscriptional regulator (TetR family)2e-0859.3
NC_011000:1262324:126468212646821265407726Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein5e-0857.8
NC_013209:2759160:277140327714032772044642Acetobacter pasteurianus IFO 3283-01, complete genometranscriptional regulator TetR6e-0857.4
NC_014976:627935:639581639581640174594Bacillus subtilis BSn5 chromosome, complete genomeTetR family transcriptional regulator9e-0857
NC_018750:3481476:351235535123553512966612Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, TetR family2e-0756.2
NC_014831:1843835:186181618618161862391576Thermaerobacter marianensis DSM 12885 chromosome, complete genomeregulatory protein TetR1e-0756.2
NC_011000:1262324:129188312918831292545663Burkholderia cenocepacia J2315 chromosome 1, complete sequenceTetR family regulatory protein2e-0755.8
NC_015593:2696000:269923826992382699945708Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completeregulatory protein TetR6e-0754.3
NC_007953:314872:334745334745335404660Burkholderia xenovorans LB400 chromosome 3, complete sequenceTranscriptional regulator, TetR family6e-0754.3
NC_012792:627500:631815631815632462648Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, TetR family9e-0753.5
NC_015172:2986867:302742730274273028068642Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometranscriptional regulator, TetR family2e-0652.8
NC_020064:3998715:402243940224394023026588Serratia marcescens FGI94, complete genometranscriptional regulator4e-0651.2
NC_008699:2916752:293651429365142937146633Nocardioides sp. JS614, complete genomeregulatory protein, TetR5e-0651.2
NC_007644:2452244:245224424522442452852609Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, TetR family8e-0650.4