Pre_GI: BLASTP Hits

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Query: NC_008228:2295841:2309153 Pseudoalteromonas atlantica T6c, complete genome

Start: 2309153, End: 2309944, Length: 792

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010943:2815865:283222528322252833019795Stenotrophomonas maltophilia K279a, complete genomeputative transcriptional regulator3e-68258
NC_014121:2514544:253240025324002533191792Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeAraC family transcriptional regulator5e-60231
NC_013850:3303500:330401633040163304807792Klebsiella variicola At-22 chromosome, complete genometranscriptional regulator, AraC family2e-57222
NC_008543:90312:919879198792808822Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, AraC family3e-54211
NC_008061:2153495:217696521769652177786822Burkholderia cenocepacia AU 1054 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-53209
NC_013956:1762171:178360717836071784491885Pantoea ananatis LMG 20103 chromosome, complete genomeYeaM2e-52205
NC_011883:487187:506470506470507279810Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,transcriptional regulator, AraC family6e-51201
NC_009040:43791:590355903559835801Rhodobacter sphaeroides ATCC 17029 plasmid pRSPH01, completetranscriptional regulator, AraC family4e-48191
NC_009656:4527457:455663845566384557474837Pseudomonas aeruginosa PA7 chromosome, complete genomeputative HTH-type transcriptional regulator YeaM3e-45182
NC_016027:2580477:259361925936192594443825Gluconacetobacter xylinus NBRC 3288, complete genometranscriptional regulator2e-42172
NC_018691:4619245:464288746428874643687801Alcanivorax dieselolei B5 chromosome, complete genomeputative transcriptional regulator4e-35148
NC_014840:76232:754807548076235756Pantoea sp. At-9b plasmid pPAT9B03, complete sequencetranscriptional regulator, AraC family2e-32139
NC_002516:4285477:428779442877944288606813Pseudomonas aeruginosa PAO1, complete genomeprobable transcriptional regulator7e-32137
NC_008463:1223012:123718312371831237995813Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative transcriptional regulator5e-32137
NC_011770:1226923:124137212413721242184813Pseudomonas aeruginosa LESB58, complete genomeputative transcriptional regulator5e-32137
NC_007348:1903937:192325319232531923978726Ralstonia eutropha JMP134 chromosome 2, complete sequenceHelix-turn-helix, AraC type1e-31136
NC_012723:71637:914479144792229783Burkholderia glumae BGR1 plasmid bglu_1p, complete sequenceTranscriptional Regulator, AraC family protein6e-31134
NC_018080:1100047:111602911160291116757729Pseudomonas aeruginosa DK2 chromosome, complete genometranscriptional regulator7e-31134
NC_014541:1753776:175619617561961756999804Ferrimonas balearica DSM 9799 chromosome, complete genometranscriptional regulator, AraC family8e-31134
NC_021150:201237:213263213263214153891Azotobacter vinelandii CA6, complete genomeTranscriptional regulator, AraC-family1e-30133
NC_012560:201237:213263213263214153891Azotobacter vinelandii DJ, complete genomeTranscriptional regulator, AraC-family1e-30133
NC_015684:3157941:318130731813073182107801Oligotropha carboxidovorans OM5 chromosome, complete genomeAraC family transcriptional regulator3e-30132
NC_011386:931140:942349942349943251903Oligotropha carboxidovorans OM5, complete genometranscriptional regulator, AraC-family4e-30131
NC_009483:936000:937489937489938325837Geobacter uraniireducens Rf4 chromosome, complete genomehelix-turn-helix domain-containing protein4e-30131
NC_016582:3763476:376347637634763764261786Streptomyces bingchenggensis BCW-1 chromosome, complete genomeAraC family transcription regulator2e-29129
NC_008752:725189:755815755815756645831Acidovorax avenae subsp. citrulli AAC00-1, complete genometranscriptional regulator, AraC family1e-29129
NC_014839:12519:319763197632758783Pantoea sp. At-9b plasmid pPAT9B02, complete sequencetranscriptional regulator, AraC family2e-28125
NC_015968:2110175:212686921268692127654786Enterobacter asburiae LF7a chromosome, complete genomeAraC family transcriptional regulator1e-27123
NC_007511:3080849:308140230814023082220819Burkholderia sp. 383 chromosome 2, complete sequencetranscriptional regulator, AraC family2e-26119
NC_014540:1835493:184139518413951842174780Burkholderia sp. CCGE1003 chromosome 2, complete sequenceAraC family transcriptional regulator3e-26119
NC_020209:47504:921739217392502330Pseudomonas poae RE*1-1-14, complete genomeDNA-binding domain-containing protein3e-26119
NC_014323:992978:102778110277811028596816Herbaspirillum seropedicae SmR1 chromosome, complete genomeAraC family transcription regulator protein5e-26118
NC_020209:47504:523785237852890513Pseudomonas poae RE*1-1-14, complete genomeAraC family transcriptional regulator4e-26118
NC_014118:987889:992476992476993264789Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, AraC family2e-25116
NC_011004:5520771:554078055407805541526747Rhodopseudomonas palustris TIE-1, complete genometranscriptional regulator, AraC family2e-25116
NC_005296:5238882:525889052588905259636747Rhodopseudomonas palustris CGA009, complete genomeCUPIN domain:transcriptional regulator, AraC family3e-25115
NC_008391:2253188:227088422708842271702819Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, AraC family9e-25114
NC_010552:293703:319588319588320406819Burkholderia ambifaria MC40-6 chromosome 2, complete sequencetranscriptional regulator, AraC family5e-25114
NC_010512:866932:867480867480868280801Burkholderia cenocepacia MC0-3 chromosome 3, complete sequencetranscriptional regulator, AraC family1e-24113
NC_008543:259450:277247277247278065819Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-24113
NC_014500:1862000:188072318807231881490768Dickeya dadantii 3937 chromosome, complete genomeAraC family transcriptional regulator2e-24112
NC_014973:4503054:450961545096154510385771Geobacter sp. M18 chromosome, complete genomeAraC family transcriptional regulator3e-24112
NC_015947:3991696:399428339942833995086804Burkholderia sp. JV3 chromosome, complete genomeAraC family transcriptional regulator3e-24112
NC_012731:2693091:269821426982142699014801Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeAraC family transcriptional regulator1e-23110
NC_016628:1190366:120559712055971206388792Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceAraC family transcriptional regulator1e-23110
NC_015663:1869000:188558618855861886341756Enterobacter aerogenes KCTC 2190 chromosome, complete genometranscriptional regulator9e-24110
NC_012731:2693091:270144927014492702216768Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeAraC family transcriptional regulator2e-23109
NC_016845:2729654:274359227435922744359768Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative AraC-type regulatory protein2e-23109
NC_011283:2627050:263595226359522636752801Klebsiella pneumoniae 342 chromosome, complete genomeAraC family transcriptional regulator2e-23109
NC_013850:2624899:263287526328752633648774Klebsiella variicola At-22 chromosome, complete genomeAraC protein arabinose-binding/dimerization2e-23109
NC_010511:1691753:170494717049471705747801Methylobacterium sp. 4-46 chromosome, complete genomeAraC family transcriptional regulator2e-23109
NC_009648:1956070:196297019629701963770801Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative ARAC-type regulatory protein1e-23109
NC_007492:6372900:640591764059176406774858Pseudomonas fluorescens PfO-1, complete genomeTranscriptional Regulator, AraC family3e-23108
NC_020126:3426439:343244534324453433212768Myxococcus stipitatus DSM 14675, complete genomeAraC family transcriptional regulator4e-23108
NC_015637:325561:338615338615339502888Vibrio anguillarum 775 chromosome chromosome II, complete sequenceAraC family transcriptional regulator5e-23108
NC_013850:2624899:262993326299332630700768Klebsiella variicola At-22 chromosome, complete genomeAraC protein arabinose-binding/dimerization6e-23107
NC_011283:2627050:263208426320842632851768Klebsiella pneumoniae 342 chromosome, complete genomeAraC family transcriptional regulator1e-22106
NC_014310:2017927:204064720406472041450804Ralstonia solanacearum PSI07 megaplasmid, complete sequencetranscriptional regulator1e-22106
NC_009648:1956070:196782919678291968596768Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative ARAC-type regulatory protein2e-22106
NC_011071:4000620:400570140057014006504804Stenotrophomonas maltophilia R551-3, complete genometranscriptional regulator, AraC family6e-22104
NC_020260:2725201:272979427297942730303510Cronobacter sakazakii Sp291, complete genomeAraC family transcriptional regulator7e-22104
NC_014931:4234288:426418542641854264967783Variovorax paradoxus EPS chromosome, complete genometranscriptional regulator, AraC family6e-21101
NC_016628:763833:767654767654768496843Vibrio furnissii NCTC 11218 chromosome 2, complete sequencesubstrate-binding transcriptional regulator, AraC family protein6e-21101
NC_009654:304000:309532309532310299768Marinomonas sp. MWYL1, complete genomeAraC family transcriptional regulator2e-2099.8
NC_014837:33014:419974199742845849Pantoea sp. At-9b chromosome, complete genomeHelix-turn-helix, AraC domain-containing protein7e-2097.8
NC_012490:2660089:266542026654202666226807Rhodococcus erythropolis PR4, complete genomeAraC family transcriptional regulator1e-1997.1
NC_010694:63654:738347383474679846Erwinia tasmaniensis, complete genomeProbable transcriptional regulator1e-1996.7
NC_011887:72364:951569515695977822Methylobacterium nodulans ORS 2060 plasmid pMNOD02, completetranscriptional regulator, AraC family5e-1994.7
NC_014666:5449884:547133154713315472074744Frankia sp. EuI1c chromosome, complete genometranscriptional regulator, AraC family7e-1994.4
NC_008700:3927896:393709039370903937857768Shewanella amazonensis SB2B, complete genomeAraC-type DNA-binding domain-containing protein9e-1994
NC_009792:2688747:269857326985732699328756Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein9e-1994
NC_014966:1668822:167527516752751676093819Vibrio vulnificus MO6-24/O chromosome II, complete sequenceAraC family transcripitonal regulator6e-1788.2
NC_010170:1551923:156014815601481560621474Bordetella petrii, complete genomeputative transcriptional regulator1e-1686.7
NC_016628:763833:765986765986766717732Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceAraC family transcriptional regulator2e-1686.7
NC_009832:622969:642567642567643334768Serratia proteamaculans 568, complete genometranscriptional regulator, AraC family2e-1686.7
NC_007802:3807500:381372638137263814487762Jannaschia sp. CCS1, complete genometranscriptional regulator, AraC family3e-1685.5
NC_015663:3742738:375106637510663751380315Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative AraC-type regulatory protein6e-1684.7
NC_018524:5066720:508661950866195087341723Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory helix-turn-helix s, AraC family protein1e-1583.6
NC_020126:7015976:702041370204137021243831Myxococcus stipitatus DSM 14675, complete genomeAraC family transcriptional regulator8e-1580.9
NC_016628:763833:780408780408780857450Vibrio furnissii NCTC 11218 chromosome 2, complete sequencesubstrate-binding transcriptional regulator, AraC family protein3e-1479
NC_007802:1240989:125477712547771255535759Jannaschia sp. CCS1, complete genometranscriptional regulator, AraC family4e-1478.6
NC_008686:1383891:143018614301861430767582Paracoccus denitrificans PD1222 chromosome 1, complete sequencehelix-turn-helix- domain containing protein, AraC type4e-1478.6
NC_015277:2096266:210040521004052101220816Sphingobacterium sp. 21 chromosome, complete genometranscriptional regulator, AraC family5e-1478.2
NC_014121:3188928:320787632078763208088213Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein5e-1478.2
NC_014158:1479313:148723614872361488009774Tsukamurella paurometabola DSM 20162 chromosome, complete genomeAraC protein arabinose-binding/dimerization9e-1373.9
NC_014210:2747787:276307727630772763898822Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,transcriptional regulator, AraC family2e-1273.2
NC_009921:6483660:649183664918366492549714Frankia sp. EAN1pec, complete genometranscriptional regulator, AraC family7e-1271.2
NC_016612:5231065:525519452551945255376183Klebsiella oxytoca KCTC 1686 chromosome, complete genomeAraC family transcriptional regulator3e-1169.3
NC_013421:1696746:170689217068921707548657Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, AraC family3e-1168.9
NC_016609:1774259:180376518037651804550786Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator2e-1066.2
NC_007963:814148:840043840043840843801Chromohalobacter salexigens DSM 3043, complete genometranscriptional regulator, AraC family2e-1066.2
NC_014718:791528:795900795900796277378Burkholderia rhizoxinica HKI 454 chromosome, complete genomeTranscriptional regulator, AraC family3e-1065.9
NC_016845:2729654:273873327387332739047315Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative AraC-type regulatory protein9e-0960.8
NC_015859:3177199:3208944320894432104971554Corynebacterium variabile DSM 44702 chromosome, complete genomeAraC DNA-binding transcription regulator1e-0860.5
NC_020541:1827689:184194618419461842887942Rhodanobacter sp. 2APBS1, complete genomeDNA-binding domain-containing protein, AraC-type4e-0755.5
NC_020054:4625895:466315146631514663993843Fibrella aestuarina BUZ 2 drat genometranscriptional regulator, AraC family6e-0754.7
NC_009921:3551036:3574481357448135760221542Frankia sp. EAN1pec, complete genometranscriptional regulator, AraC family8e-0754.3
NC_009092:3783000:3792254379225437932551002Shewanella loihica PV-4, complete genometranscriptional regulator, AraC family1e-0653.9
NC_013406:1640787:1643715164371516449321218Paenibacillus sp. Y412MC10 chromosome, complete genometwo component AraC family transcriptional regulator1e-0653.9
NC_014550:301894:3114933114933128781386Arthrobacter arilaitensis Re117, complete genomeAraC family transcriptional regulator2e-0653.1
NC_003485:1707653:1709595170959517108001206Streptococcus pyogenes MGAS8232, complete genomeputative transcriptional regulator3e-0652.4
NC_020291:1045058:1049931104993110514631533Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometwo component transcriptional regulator, AraC family4e-0652