Pre_GI: BLASTP Hits

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Query: NC_008149:2652825:2655460 Yersinia pestis Nepal516, complete genome

Start: 2655460, End: 2655978, Length: 519

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from Nepal. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010159:1710268:1712903171290317149842082Yersinia pestis Angola, complete genomeputative sensory box-containing diguanylate cyclase8e-99358
NC_008800:1942000:1961046196104619631212076Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-82303
NC_011894:6708970:6710443671044367124251983Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase2e-40164
NC_017249:7917586:7930165793016579321591995Bradyrhizobium japonicum USDA 6, complete genometwo-component hybrid sensor and regulator4e-40164
NC_007348:752692:7526927526927546111920Ralstonia eutropha JMP134 chromosome 2, complete sequencePAS1e-39162
NC_010172:3712000:3725376372537637274122037Methylobacterium extorquens PA1, complete genomePAS sensor protein2e-38157
NC_011757:39881:4793747937503692433Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase5e-38156
NC_012988:4075429:4091338409133840933351998Methylobacterium extorquens DM4, complete genomesensor hybrid histidine kinase with multiple PAS and response regulator receiver domains1e-37155
NC_017249:4365935:4380207438020743825702364Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein8e-38155
NC_004463:2344128:2350024235002423519281905Bradyrhizobium japonicum USDA 110, complete genometwo-component hybrid sensor and regulator8e-38155
NC_011894:3623500:3624775362477536267631989Methylobacterium nodulans ORS 2060, complete genomePAS/PAC sensor hybrid histidine kinase5e-37153
NC_009483:2640403:2640403264040326430782676Geobacter uraniireducens Rf4 chromosome, complete genomePAS/PAC sensor signal transduction histidine kinase3e-30131
NC_007951:2045830:2054351205435120567202370Burkholderia xenovorans LB400 chromosome 1, complete sequencePAS/PAC Sensor Hybrid Histidine Kinase2e-28124
NC_012808:3711806:3728812372881237304761665Methylobacterium extorquens AM1, complete genome4e-28124
NC_008027:2397255:2397255239725523993662112Pseudomonas entomophila L48, complete genomesensory box protein6e-28123
NC_008149:2652825:2656187265618726575421356Yersinia pestis Nepal516, complete genomehypothetical protein7e-28123
NC_012660:3179980:3203836320383632061512316Pseudomonas fluorescens SBW25 chromosome, complete genomeputative aerobic respiration sensor-response protein; histidine protein kinase/phosphatase, sensor for arcA2e-27122
NC_015376:3249773:3264864326486432672962433Burkholderia gladioli BSR3 chromosome chromosome 2, completesensory box sensor histidine kinase/response regulator3e-27120
NC_014640:4532095:4532095453209545332881194Achromobacter xylosoxidans A8 chromosome, complete genomesensory box protein 87e-27119
NC_012483:483425:5242655242655266102346Acidobacterium capsulatum ATCC 51196, complete genomesigma-54 dependent transcriptional regulator, Fis family1e-25115
NC_016626:1699500:1709507170950717110331527Burkholderia sp. YI23 plasmid byi_1p, complete sequencePAS/PAC sensor hybrid histidine kinase4e-25114
NC_007005:2191500:2211083221108322134222340Pseudomonas syringae pv. syringae B728a, complete genomePAS2e-24111
NC_002947:4167500:4233549423354942350601512Pseudomonas putida KT2440, complete genomesensory box protein3e-24111
NC_002944:1881405:1903102190310219046401539Mycobacterium avium subsp. paratuberculosis K-10, complete genomehypothetical protein2e-23108
NC_013037:6209424:6240723624072362449374215Dyadobacter fermentans DSM 18053, complete genomeMCP methyltransferase/methylesterase, CheR/CheB with PAS/PAC sensor5e-22103
NC_011894:6516856:6541953654195365438601908Methylobacterium nodulans ORS 2060, complete genomesignal transduction histidine kinase2e-21101
NC_014221:792363:7923637923637935231161Truepera radiovictrix DSM 17093 chromosome, complete genometranscriptional regulator, LuxR family4e-1994
NC_008752:2615360:2636818263681826414254608Acidovorax avenae subsp. citrulli AAC00-1, complete genomesignal transduction histidine kinase with CheB and CheR activity2e-1788.6
NC_015138:3160764:3160764316076431653684605Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completesignal transduction histidine kinase with CheB and CheR activity2e-1788.2
NC_016010:1822212:1896930189693018997852856Xanthomonas axonopodis pv. citrumelo F1 chromosome, completesensory box histidine kinase/response regulator hybrid7e-1786.7
NC_015136:1101725:1101725110172511059364212Burkholderia sp. CCGE1001 chromosome 1, complete sequencesignal transduction histidine kinase with CheB and CheR activity8e-1579.7
NC_015666:1849618:1849618184961818519842367Halopiger xanaduensis SH-6 chromosome, complete genomeputative PAS/PAC sensor protein1e-1479
NC_011757:517000:5364535364535397223270Methylobacterium chloromethanicum CM4, complete genomemulti-sensor hybrid histidine kinase3e-1477.8
NC_010505:5525461:5546057554605755497313675Methylobacterium radiotolerans JCM 2831, complete genomemulti-sensor hybrid histidine kinase1e-1376.3
NC_007760:4055860:4055860405586040591263267Anaeromyxobacter dehalogenans 2CP-C, complete genomePAS/PAC sensor hybrid histidine kinase3e-1374.7
NC_011757:3486283:3521250352125035240782829Methylobacterium chloromethanicum CM4, complete genomePAS/PAC sensor hybrid histidine kinase3e-1271.2
NC_007484:3358000:3369303336930333715672265Nitrosococcus oceani ATCC 19707, complete genomePAS sensor, serine phosphatase RsbU regulator of sigma subunit9e-1269.7
NC_014315:3207684:3219592321959232218682277Nitrosococcus watsoni C-113 chromosome, complete genomeputative PAS/PAC sensor protein1e-0962.8
NC_003901:2906493:2906493290649329091502658Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase3e-0961.2
NC_009483:1779601:1802418180241818049162499Geobacter uraniireducens Rf4 chromosome, complete genomemulti-sensor signal transduction histidine kinase5e-0960.5
NC_003552:1492500:1513317151331715176874371Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase6e-0960.5
NC_013158:2303000:2315697231569723168361140Halorhabdus utahensis DSM 12940, complete genomePAS/PAC sensor signal transduction histidine kinase7e-0960.1
NC_008346:1499963:1525038152503815264531416Syntrophomonas wolfei subsp. wolfei str. Goettingen, completeHD-GYP domain-like protein1e-0859.7
NC_010814:190673:200246200246200680435Geobacter lovleyi SZ, complete genomeputative PAS/PAC sensor protein9e-0959.7
NC_012880:3645304:3661255366125536653794125Dickeya dadantii Ech703, complete genomemulti-sensor hybrid histidine kinase1e-0859.3
NC_008726:3858209:3862007386200738645592553Mycobacterium vanbaalenii PYR-1, complete genomediguanylate cyclase with PAS/PAC sensor1e-0859.3
NC_007355:2039435:2054203205420320570402838Methanosarcina barkeri str. fusaro chromosome 1, complete sequencesensory transduction histidine kinase2e-0858.9
NC_003552:1492500:1510392151039215122421851Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase3e-0858.2
NC_007355:2426000:2426018242601824297643747Methanosarcina barkeri str. fusaro chromosome 1, complete sequencesignal-transducing histidine kinase3e-0857.8
NC_015320:160792:1633571633571662782922Archaeoglobus veneficus SNP6 chromosome, complete genomePAS sensor protein3e-0857.8
NC_015574:1474967:1492207149220714946212415Methanobacterium sp. SWAN-1 chromosome, complete genomesignal transduction histidine kinase4e-0857.4
NC_019897:3810000:3830137383013738319901854Thermobacillus composti KWC4 chromosome, complete genomePAS domain-containing protein4e-0857.4
NC_013665:1766158:176615817661581767072915Methanocella paludicola SANAE, complete genomeputative signaling protein7e-0856.6
NC_013960:452493:4651284651284671822055Nitrosococcus halophilus Nc4 chromosome, complete genomePAS sensor protein1e-0755.8
NC_017249:2073558:207355820735582074085528Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-0755.5
NC_014972:1923035:1941238194123819435022265Desulfobulbus propionicus DSM 2032 chromosome, complete genomeputative PAS/PAC sensor protein2e-0755.5
NC_009483:3173464:3183932318393231867212790Geobacter uraniireducens Rf4 chromosome, complete genomePAS/PAC sensor hybrid histidine kinase3e-0754.3
NC_008800:1942000:1942268194226819435901323Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein4e-0754.3
NC_020829:940692:9406929406929448764185Pseudomonas denitrificans ATCC 13867, complete genomemotility regulator5e-0753.9
NC_011832:2668337:2683714268371426862482535Candidatus Methanosphaerula palustris E1-9c, complete genomePAS/PAC sensor signal transduction histidine kinase6e-0753.5
NC_009633:2137999:2153158215315821554792322Alkaliphilus metalliredigens QYMF chromosome, complete genomePAS/PAC sensor hybrid histidine kinase6e-0753.5
NC_014507:2568933:2570827257082725736942868Methanoplanus petrolearius DSM 11571 chromosome, complete genomemulti-sensor signal transduction histidine kinase7e-0753.1
NC_012796:4693500:4714436471443647185634128Desulfovibrio magneticus RS-1, complete genometwo-component hybrid sensor and regulator9e-0753.1
NC_018012:1274500:1293814129381412993365523Thiocystis violascens DSM 198 chromosome, complete genomePAS domain-containing protein1e-0652.8
NC_010322:1817598:1817598181759818199882391Pseudomonas putida GB-1 chromosome, complete genomePAS/PAC sensor-containing diguanylate cyclase5e-0650.4
NC_011146:2485625:2485625248562524894073783Geobacter bemidjiensis Bem, complete genomemulti-sensor hybrid histidine kinase9e-0649.7