Pre_GI: BLASTP Hits

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Query: NC_008120:62000:67368 Yersinia pestis Antiqua plasmid pMT, complete sequence

Start: 67368, End: 67712, Length: 345

Host Lineage: Yersinia pestis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated from a soil sample from the Republic of Congo. Causative agent of plague. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. It is the causative agent of plague (bubonic and pulmonary) a devastating disease which has killed millions worldwide. The organism can be transmitted from rats to humans through the bite of an infected flea or from human-to-human through the air during widespread infection. Yersinia pestis is an extremely pathogenic organism that requires very few numbers in order to cause disease, and is often lethal if left untreated. The organism is enteroinvasive, and can survive and propagate in macrophages prior to spreading systemically throughout the host. Yersinia pestis consists of three biotypes or serovars, Antiqua, Mediavalis, and Orientalis, that are associated with three major pandemics throughout human history. pMT1 encodes a protein, murine toxin, that aids rat-to-human transmission by enhancing survival of the organism in the flea midgut. Yersinia pestis also contains a PAI on the chromosome that is similar to the SPI-2 PAI from Salmonella that allows intracellular survival in the organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005815:61148:7147671476726541179Yersinia pestis biovar Microtus str. 91001 plasmid pMT1, completeputative integrase5e-62236
NC_004838:51013:8293182931841091179Yersinia pestis KIM plasmid pMT-1, complete sequence5e-62236
NC_003134:64672:8714787147883251179Yersinia pestis CO92 plasmid pMT1, complete sequence5e-62236
NC_008118:56777:6514665146662491104Yersinia pestis Nepal516 plasmid pMT, complete sequenceintegrase7e-62235
NC_009378:62215:7058470584716871104Yersinia pestis Pestoides F plasmid MT, complete sequenceintegrase7e-62235
NC_014258:355845:3591013591013602401140Pantoea vagans C9-1 plasmid pPag3, complete sequenceprophage Cp4-57 integrase8e-27119
NC_015062:99969:1189951189951201191125Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequenceintegrase family protein1e-22105
NC_011601:2854178:2869825286982528710871263Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeintegrase1e-1168.6
NC_013456:212150:2178712178712190881218Vibrio sp. Ex25 chromosome 1, complete genomeintegrase5e-1166.6
NC_013508:26348:5392753927551951269Edwardsiella tarda EIB202, complete genomeputative integrase5e-1166.2
NC_006350:1316000:1336223133622313374641242Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative phage integrase2e-1064.7
NC_013961:73037:9431494314955371224Erwinia amylovora, complete genomeIntegrase3e-1063.9
NC_013971:73037:9431494314955371224Erwinia amylovora ATCC 49946 chromosome, complete genomeintegrase3e-1063.9
NC_007954:334795:3552773552773564911215Shewanella denitrificans OS217, complete genomephage integrase3e-1063.9
NC_011094:3778000:3804662380466238059241263Salmonella enterica subsp. enterica serovar Schwarzengrund strsite-specific recombinase, phage integrase family protein4e-1063.5
NC_009778:4014026:4042971404297140442331263Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-1063.5
NC_007626:697926:7051257051257063541230Magnetospirillum magneticum AMB-1, complete genomeIntegrase1e-0961.6
NC_002939:2337402:2337618233761823389791362Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu56, integrase2e-0961.6
NC_002939:2315402:2337618233761823389791362Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu56, integrase2e-0961.6
NC_016602:173314:1791541791541803711218Vibrio furnissii NCTC 11218 chromosome 1, complete sequencesite-specific recombinase, phage integrase family2e-0960.8
NC_020911:2921925:2929766292976629308961131Octadecabacter antarcticus 307, complete genomeputative phage integrase2e-0960.8
NC_008577:4533574:4539288453928845405021215Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein3e-0960.5
NC_007517:2564361:2583217258321725844611245Geobacter metallireducens GS-15, complete genomePhage integrase4e-0960.1
NC_008786:4579490:459699245969924597477486Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein5e-0959.7
NC_011901:1860887:1864546186454618656311086Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeintegrase family protein7e-0959.3
NC_015136:1141925:1158796115879611600731278Burkholderia sp. CCGE1001 chromosome 1, complete sequenceintegrase family protein2e-0857.8
NC_002939:47406:7972579725810441320Geobacter sulfurreducens PCA, complete genomeintegrative genetic element Gsu32, integrase3e-0857
NC_017046:2756000:2774953277495327761821230Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage integrase4e-0857
NC_016856:2812905:2829421282942128306501230Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sintegrase-like protein4e-0857
NC_011080:2761403:2777919277791927791481230Salmonella enterica subsp. enterica serovar Newport str. SL254,phage integrase family protein4e-0857
NC_007493:1929000:1930262193026219315031242Rhodobacter sphaeroides 2.4.1 chromosome 1, complete sequencepossible phage-related integrase5e-0856.6
NC_020911:3046916:3057856305785630589891134Octadecabacter antarcticus 307, complete genomeDNA integration/recombination/inversion protein6e-0856.2
NC_015563:4959843:4977650497765049789391290Delftia sp. Cs1-4 chromosome, complete genomeintegrase family protein5e-0856.2
NC_003911:1265972:1279111127911112802381128Silicibacter pomeroyi DSS-3, complete genomesite-specific recombinase, phage integrase family5e-0856.2
NC_015740:2407500:2415772241577224171721401Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completephage integrase family protein7e-0855.8
NC_012668:3037345:3061789306178930630301242Vibrio cholerae MJ-1236 chromosome 1, complete sequencephage Integrase1e-0755.5
NC_012587:1203103:1216780121678012180691290Rhizobium sp. NGR234, complete genomeDNA integration/recombination/invertion protein1e-0755.5
NC_007511:1147696:1155585115558511568591275Burkholderia sp. 383 chromosome 2, complete sequencePhage integrase2e-0754.7
NC_010515:2691000:2696943269694326982171275Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceintegrase family protein2e-0754.7
NC_014834:2264108:2290996229099622921801185Rhodopseudomonas palustris DX-1 chromosome, complete genomeintegrase family protein2e-0754.3
NC_013892:1272448:1295680129568012968971218Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein3e-0753.9
NC_013851:2729000:2730696273069627319731278Allochromatium vinosum DSM 180 chromosome, complete genomeintegrase family protein4e-0753.5
NC_012918:928903:9674749674749687571284Geobacter sp. M21 chromosome, complete genomeintegrase family protein5e-0753.1
NC_004603:370320:3810543810543824211368Vibrio parahaemolyticus RIMD 2210633 chromosome I, completeputative integrase5e-0753.1
NC_012918:928903:9578379578379591381302Geobacter sp. M21 chromosome, complete genomeintegrase family protein7e-0752.8
NC_013353:3853082:3889751388975138910671317Escherichia coli O103:H2 str. 12009, complete genomeintegrase9e-0752.4
AP010958:3853082:3889751388975138910671317Escherichia coli O103:H2 str. 12009 DNA, complete genomeputative integrase9e-0752.4
NC_014618:690056:6979296979296992631335Enterobacter cloacae SCF1 chromosome, complete genomeintegrase family protein1e-0652
NC_017506:1100679:1109355110935511107041350Marinobacter adhaerens HP15 chromosome, complete genomephage integrase family protein1e-0652
NC_020911:1776670:1793824179382417951251302Octadecabacter antarcticus 307, complete genomeputative phage integrase2e-0650.8
NC_015717:2479394:2483484248348424846561173Hyphomicrobium sp. MC1, complete genomeputative Integrase family protein3e-0650.8