Pre_GI: BLASTP Hits

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Query: NC_007951:2087385:2102514 Burkholderia xenovorans LB400 chromosome 1, complete sequence

Start: 2102514, End: 2104355, Length: 1842

Host Lineage: Burkholderia xenovorans; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: Originally identified as Pseudomonas sp. LB400 that was found in contaminated soil in upstate New York, USA, this organism is now classified in the genus Burkholderia. Polychlorinated biphenyl-degrading bacterium. Member of the genus Burkholderia are versatile organisms that occupy a surprisingly wide range of ecological niches. These bacteria are exploited for biocontrol, bioremediation, and plant growth promotion purposes. Burkholderia xenovorans has been found on fungi, animals, and from human clinical isolates such as from cystic fibrosis (CF) patients. It may be tightly associated with white-rot fungus, as the degadation of lignin by the fungus results in aromatic compounds the bacterium can then degrade. This organism is exceptionally capable of degradation of polychlorinated biphenyls (PCBs), which are environmental pollutants, and thus it may play a role in bioremediation of polluted and toxic sites and is studied as a model bioremediator. PCBs can be utilized as the sole carbon and energy source by this organism. The pathways for degradation of PCBs have been extensively characterized at both the genetic and the molecular level and have become a model system for the bacterial breakdown of these very persistent environmental contaminants.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_021184:1484352:1502760150276015045771818Desulfotomaculum gibsoniae DSM 7213, complete genomeputative ATP-dependent endonuclease of the OLD family4e-178625
NC_009138:1974935:2008206200820620099901785Herminiimonas arsenicoxydans, complete genomehypothetical protein2e-146520
NC_012691:2614603:2652902265290226546891788Tolumonas auensis DSM 9187, complete genomehypothetical protein4e-145515
NC_010688:2781624:2832215283221528340021788Xanthomonas campestris pv. campestris, complete genomeHypothetical protein ybjD.3e-141502
NC_014311:3076519:3095153309515330969521800Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein1e-138493
NC_007974:2048000:2083641208364120854371797Ralstonia metallidurans CH34 chromosome 2, complete sequenceputative exonuclease9e-138491
NC_013850:1753716:1761023176102317628071785Klebsiella variicola At-22 chromosome, complete genomehypothetical protein5e-136485
NC_013421:1780722:1780722178072217825121791Pectobacterium wasabiae WPP163, complete genomehypothetical protein2e-132473
NC_009075:15017:2882528825306091785Burkholderia pseudomallei 668 chromosome II, complete sequencehypothetical protein2e-132473
NC_016943:21364:2534925349270461698Blastococcus saxobsidens DD2, complete genomeputative exonuclease3e-93343
NC_008609:1976403:2015460201546020175712112Pelobacter propionicus DSM 2379, complete genomehypothetical protein3e-45183
NC_008752:725189:7360817360817382192139Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein5e-40166
NC_011740:2859933:2868232286823228702802049Escherichia fergusonii ATCC 35469, complete genomehypothetical protein8e-38159
NC_015416:621513:6320776320776339181842Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein1e-37158
NC_015177:1822000:1839871183987118420122142Pedobacter saltans DSM 12145 chromosome, complete genomeSMC domain protein2e-36154
NC_009792:3665369:3676649367664936787842136Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein8e-36152
NC_003064:22535:2460024600264681869Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein1e-35151
NC_003306:22228:2442824428261611734Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein2e-35151
NC_011768:79297:8994689946919612016Desulfatibacillum alkenivorans AK-01, complete genomeSMC domain protein4e-34146
NC_009659:1129066:1158048115804811598651818Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein2e-33144
NC_012691:1743038:1778403177840317803551953Tolumonas auensis DSM 9187, complete genomeRecF/RecN/SMC N domain protein1e-32141
CP002516:44744:5839258392600921701Escherichia coli KO11, complete genomeSMC domain-containing protein7e-32139
CP002185:4035502:4045981404598140476811701Escherichia coli W, complete genomehypothetical protein7e-32139
NC_016902:44744:5839258392600921701Escherichia coli KO11FL chromosome, complete genomeSMC domain-containing protein7e-32139
NC_007760:3655433:3677752367775236795991848Anaeromyxobacter dehalogenans 2CP-C, complete genomeATP-dependent endonuclease of the OLD family-like6e-32139
NC_014507:906960:9169179169179188451929Methanoplanus petrolearius DSM 11571 chromosome, complete genomeSMC domain-containing protein8e-31135
NC_003552:2634828:2644101264410126461702070Methanosarcina acetivorans C2A, complete genomehypothetical protein1e-30135
NC_010322:4623867:4639471463947146411951725Pseudomonas putida GB-1 chromosome, complete genomeSMC domain-containing protein1e-30135
NC_011283:1178500:1185994118599411877451752Klebsiella pneumoniae 342 chromosome, complete genomeOLD family TOPRIM nucleotidyl transferase/hydrolase domain protein2e-30134
NC_003919:4618988:4636552463655246382341683Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein5e-30133
NC_020260:603796:6273036273036287601458Cronobacter sakazakii Sp291, complete genomehypothetical protein6e-30132
NC_020181:5130513:5143737514373751454881752Enterobacter aerogenes EA1509E, complete genomeATP-dependent endonuclease of the OLD family-like protein7e-30132
NC_018868:619113:6601256601256620771953Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein4e-28126
NC_008435:4530797:4542885454288545446331749Rhodopseudomonas palustris BisA53, complete genomeATP-dependent endonuclease of the OLD family-like protein2e-27124
NC_018645:3029785:3038101303810130402422142Desulfobacula toluolica Tol2, complete genomeDNA replication and repair protein, relted to recF1e-26122
NC_016609:2150863:2167046216704621689921947Niastella koreensis GR20-10 chromosome, complete genomeATP-dependent OLD family endonuclease2e-26121
NC_017082:6321124:6328590632859063306292040Bradyrhizobium sp. S23321, complete genomeATP-dependent OLD family endonuclease3e-26120
NC_015660:3328595:3345598334559833475441947Geobacillus thermoglucosidasius C56-YS93 chromosome, completeSMC domain-containing protein6e-26119
NC_007925:3933765:3937108393710839391952088Rhodopseudomonas palustris BisB18, complete genomeSMC protein-like5e-25116
NC_008781:1038158:1047602104760210495151914Polaromonas naphthalenivorans CJ2, complete genomeATP-dependent endonuclease of the OLD family1e-24115
NC_017187:1564403:1579166157916615808781713Arcobacter butzleri ED-1, complete genomeputative endonuclease3e-24114
NC_007907:5185510:5270756527075652728822127Desulfitobacterium hafniense Y51, complete genomehypothetical protein1e-23111
NC_010465:3431500:3435097343509734371452049Yersinia pseudotuberculosis YPIII, complete genomeSMC (structural maintenance of chromosomes) family protein1e-21105
NC_007760:3735749:3744893374489337471692277Anaeromyxobacter dehalogenans 2CP-C, complete genomeOLD family-like ATP-dependent endonuclease1e-21105
NC_009801:3374501:3385117338511733869401824Escherichia coli E24377A, complete genomehypothetical protein3e-1997.4
NC_012880:3421500:3442349344234934443281980Dickeya dadantii Ech703, complete genomeputative exonuclease4e-1997.1
NC_009483:2136424:2142567214256721444891923Geobacter uraniireducens Rf4 chromosome, complete genomeATP-dependent OLD family endonuclease8e-1995.9
NC_015138:2069739:2080545208054520829532409Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein2e-1894.4
NC_018665:2163713:2175404217540421774522049Exiguobacterium antarcticum B7 chromosome, complete genomeHypothetical protein3e-1894.4
NS_000195:526983:5434625434625453511890Candidatus Cloacamonas acidaminovoranshypothetical protein3e-1894
NC_014803:709000:7142497142497160841836Pseudoalteromonas sp. SM9913 chromosome chromosome I, completehypothetical protein6e-1893.2
NC_018867:10238:5389753897557921896Dehalobacter sp. CF chromosome, complete genomeputative ATP-dependent endonuclease of the OLD family7e-1892.8
NC_008463:5313527:5348012534801253504352424Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein8e-1892.4
NC_013198:394000:4536564536564557462091Lactobacillus rhamnosus GG, complete genomepredicted ORF1e-1791.7
NC_016887:3201976:3214002321400232158101809Nocardia cyriacigeorgica GUH-2, complete genomeputative ATP-dependent endonuclease of the OLD family-like protein1e-1791.7
NC_013166:32474:6755567555695401986Kangiella koreensis DSM 16069, complete genomehypothetical protein2e-1791.3
NC_019904:5308998:5319280531928053213012022Echinicola vietnamensis DSM 17526 chromosome, complete genomeOLD family ATP-dependent endonuclease3e-1687
NC_008542:197500:2275572275572296262070Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceATP-dependent endonuclease of the OLD family-like protein1e-1585.5
NC_011901:2983555:2988278298827829903022025Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeATP-dependent OLD family endonuclease5e-1583.2
NC_013456:1843000:1849597184959718517412145Vibrio sp. Ex25 chromosome 1, complete genomepathogenesis related protein1e-1482
NC_010338:4108280:4127866412786641299412076Caulobacter sp. K31, complete genomeconserved hypothetical membrane spanning protein4e-1480.1
NC_009441:4328035:4346439434643943488202382Flavobacterium johnsoniae UW101 chromosome, complete genomeATP-dependent OLD family endonuclease5e-1480.1
NC_009484:857384:8821498821498840921944Acidiphilium cryptum JF-5 chromosome, complete genomeATP-dependent OLD family endonuclease6e-1479.7
NC_016776:1609476:1611260161126016129781719Bacteroides fragilis 638R, complete genomeputative ATP-dependent endonuclease protein1e-1379
NC_017506:1222000:1229809122980912318692061Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein1e-1378.6
NC_008757:151862:1683401683401702771938Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completetranscriptional regulator, Fis family2e-1377.8
NC_009442:908507:9085079085079105942088Streptococcus suis 05ZYH33 chromosome, complete genomehypothetical protein3e-1377.8
NC_014376:3732547:3759236375923637612992064Clostridium saccharolyticum WM1 chromosome, complete genomehypothetical protein3e-1377.4
NC_016901:5130147:5159540515954051614591920Shewanella baltica OS678 chromosome, complete genomeSMC domain-containing protein3e-1377.4
NC_009997:5188221:5218918521891852208371920Shewanella baltica OS195, complete genomeATP-dependent endonuclease of the OLD family3e-1377.4
NC_013132:5250385:5272842527284252751842343Chitinophaga pinensis DSM 2588, complete genomeATP-dependent endonuclease, OLD family4e-1377
NC_015387:1091403:1098920109892011003771458Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeSMC domain protein3e-1377
NC_011206:262844:2789572789572812782322Acidithiobacillus ferrooxidans ATCC 53993, complete genomeATP-dependent endonuclease, OLD family5e-1376.6
NC_019972:145617:1691041691041711852082Methanomethylovorans hollandica DSM 15978 plasmid pMETHO01,hypothetical protein8e-1375.9
NC_018866:1328623:1339251133925113413712121Dehalobacter sp. DCA chromosome, complete genomehypothetical protein2e-1275.1
NC_007929:1637261:1647690164769016497292040Lactobacillus salivarius subsp. salivarius UCC118, complete genomehypothetical protein3e-1274.3
NC_009076:3765441:3791874379187437935141641Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein1e-1172.4
NC_010524:2117347:2124287212428721258551569Leptothrix cholodnii SP-6, complete genomehypothetical protein3e-1170.9
NC_017030:9818064:9827517982751798295202004Corallococcus coralloides DSM 2259 chromosome, complete genomeATP-dependent OLD family endonuclease3e-1170.9
NC_007951:2904644:2921660292166029240082349Burkholderia xenovorans LB400 chromosome 1, complete sequencePredicted ATP-dependent endonuclease, OLD family4e-1170.1
NC_014974:404015:4173414173414189271587Thermus scotoductus SA-01 chromosome, complete genomeputative ATP-dependent endonuclease of the OLD family8e-1169.3
NC_014618:690056:7142527142527165672316Enterobacter cloacae SCF1 chromosome, complete genomeATP-dependent endonuclease2e-1068.2
NC_015422:2806832:2827485282748528295092025Alicycliphilus denitrificans K601 chromosome, complete genomeATP-dependent OLD family endonuclease2e-1068.2
NC_013131:7945280:7983002798300279850112010Catenulispora acidiphila DSM 44928, complete genomeATP-dependent OLD family endonuclease2e-1068.2
NC_014002:1061501:1076825107682510788822058Methanohalophilus mahii DSM 5219 chromosome, complete genomeATP-dependent endonuclease of the OLD family2e-1068.2
NC_013894:464907:4724864724864741711686Thermocrinis albus DSM 14484 chromosome, complete genomeATP-dependent endonuclease of the OLD family-like protein2e-1067.8
NC_018645:3029785:3045540304554030473121773Desulfobacula toluolica Tol2, complete genomeATP-dependent endonuclease, OLD family3e-1067.8
NC_006085:925604:9282669282669298731608Propionibacterium acnes KPA171202, complete genomehypothetical protein5e-1066.6
NC_017190:3879148:3910644391064439128152172Bacillus amyloliquefaciens LL3 chromosome, complete genomehypothetical protein8e-1066.2
NC_017191:3841170:3852765385276538549362172Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein8e-1066.2
NC_017188:3839478:3851073385107338531782106Bacillus amyloliquefaciens TA208 chromosome, complete genometopoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase8e-1066.2
NC_014121:598669:6080956080956098341740Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeATP-dependent OLD family endonuclease1e-0965.1
NC_007946:289425:2996222996223017692148Escherichia coli UTI89, complete genomehypothetical protein3e-0963.9
NC_015379:908904:9647329647329669302199Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein4e-0963.5
NC_002516:2113186:2120225212022521222221998Pseudomonas aeruginosa PAO1, complete genomehypothetical protein8e-0962.8
NC_015458:2338437:2368576236857623704831908Pusillimonas sp. T7-7 chromosome, complete genomeATP-dependent OLD family endonuclease9e-0962.4
NC_010995:4460413:4470565447056544728172253Cellvibrio japonicus Ueda107, complete genomehypothetical protein9e-0962.4
NC_010645:369408:3822983822983838661569Bordetella avium 197N, complete genomehypothetical protein1e-0862
NC_013204:989103:99948499948410011781695Eggerthella lenta DSM 2243, complete genomeSMC domain protein3e-0860.5
NC_019673:6298342:6304404630440463062181815Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein5e-0860.1
NC_016620:781995:7861157861157878391725Bacteriovorax marinus SJ, complete genomehypothetical protein5e-0860.1
NC_008321:2190000:2195186219518621969551770Shewanella sp. MR-4, complete genomeATP-dependent endonuclease of the OLD family-like protein6e-0859.7
NC_008686:1383891:1409683140968314119172235Paracoccus denitrificans PD1222 chromosome 1, complete sequencehypothetical protein7e-0859.3
NC_007651:3064530:3116914311691431192682355Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein8e-0859.3
NC_016817:185000:2021482021482033381191Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequenceSMC (structural maintenance of chromosomes) family protein1e-0758.9
NC_015730:1918000:1924944192494419271842241Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein1e-0758.9
NC_009429:401500:4096894096894116621974Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completeATP-dependent exoDNAse beta subunit3e-0757.8
NC_004551:100840:1008401008401024111572Tropheryma whipplei TW08/27, complete genomeconserved hypothetical protein (ATP-binding)2e-0654.7
NC_009437:685214:7006837006837024281746Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeATP-dependent OLD family endonuclease3e-0653.9
NC_008209:3313087:3314733331473333158241092Roseobacter denitrificans OCh 114, complete genomehypothetical protein4e-0653.5
NC_010617:774914:7909067909067929842079Kocuria rhizophila DC2201, complete genomehypothetical protein5e-0653.5
NC_012483:3731542:3765102376510237669491848Acidobacterium capsulatum ATCC 51196, complete genomehypothetical protein6e-0653.1