Pre_GI: BLASTP Hits

Some Help

Query: NC_007613:4217557:4236039 Shigella boydii Sb227, complete genome

Start: 4236039, End: 4236482, Length: 444

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:4821519:483881248388124839294483Escherichia coli SMS-3-5, complete genomeDNA polymerase III, chi subunit1e-82304
NC_011742:4795733:481305648130564813499444Escherichia coli S88 chromosome, complete genomeDNA polymerase III subunit chi1e-82304
NC_010658:4494103:449410344941034494546444Shigella boydii CDC 3083-94, complete genomeDNA polymerase III, chi subunit1e-82304
NC_012967:4449576:446687044668704467313444Escherichia coli B str. REL606 chromosome, complete genomeDNA polymerase III subunit chi2e-82303
NC_010473:4564590:458366845836684584111444Escherichia coli str. K-12 substr. DH10B, complete genomeDNA polymerase III, chi subunit2e-81300
AC_000091:4472000:448851744885174488960444Escherichia coli W3110 DNA, complete genomeDNA polymerase III, chi subunit2e-81300
NC_000913:4462782:448186044818604482303444Escherichia coli K12, complete genomeDNA polymerase III subunit chi2e-81300
NC_020063:4127161:415030241503024150745444Enterobacteriaceae bacterium strain FGI 57, complete genomeDNA polymerase III, chi subunit4e-78289
NC_004547:442927:460923460923461372450Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeDNA polymerase III subunit chi5e-59226
NC_014500:443874:446746446746447195450Dickeya dadantii 3937 chromosome, complete genomeDNA polymerase III, subunit chi1e-58224
NC_012880:4117376:413062341306234131093471Dickeya dadantii Ech703, complete genomeDNA-directed DNA polymerase2e-58224
NC_012912:4194821:420930442093044209753450Dickeya zeae Ech1591, complete genomeDNA-directed DNA polymerase2e-58223
NC_007712:3629358:365215036521503652599450Sodalis glossinidius str. 'morsitans', complete genomeDNA polymerase III chi subunit3e-56216
NC_015061:4203767:422007242200724220557486Rahnella sp. Y9602 chromosome, complete genomeDNA-directed DNA polymerase3e-55213
NC_017047:4298207:431398743139874314472486Rahnella aquatilis HX2 chromosome, complete genomeDNA polymerase III subunit chi3e-55213
NC_020418:116500:159235159235159684450Morganella morganii subsp. morganii KT, complete genomeDNA polymerase III chi subunit1e-52204
NC_016632:1695500:170252917025291702981453Serratia symbiotica str. 'Cinara cedri' chromosome, completeDNA polymerase III subunit chi2e-51201
NC_020211:554736:557625557625558074450Serratia marcescens WW4, complete genomeDNA polymerase III, chi subunit6e-51199
NC_009092:1047500:105247710524771052938462Shewanella loihica PV-4, complete genomeDNA polymerase III chi subunit, HolC5e-26116
NC_017270:2500815:251872225187222519186465Vibrio cholerae LMA3984-4 chromosome chromosome I, completeDNA polymerase III subunit chi1e-24112
NC_020829:4246847:426501642650164265444429Pseudomonas denitrificans ATCC 13867, complete genomeDNA polymerase III subunit chi4e-1580.1
NC_011770:1226923:123912312391231239551429Pseudomonas aeruginosa LESB58, complete genomeDNA polymerase III, chi subunit6e-1579.7
NC_008463:1223012:123493412349341235362429Pseudomonas aeruginosa UCBPP-PA14, complete genomeDNA polymerase holoenzyme chi subunit5e-1579.7
NC_018080:1100047:111369611136961114124429Pseudomonas aeruginosa DK2 chromosome, complete genomeDNA polymerase III subunit chi2e-1477.8
NC_002516:4285477:429042742904274290855429Pseudomonas aeruginosa PAO1, complete genomeDNA polymerase III subunit chi2e-1477.8
NC_018012:1076839:109639310963931096824432Thiocystis violascens DSM 198 chromosome, complete genomeDNA polymerase III subunit chi2e-1271.2
NC_007484:293763:315513315513315944432Nitrosococcus oceani ATCC 19707, complete genomeDNA polymerase III chi subunit, HolC5e-1269.7
NC_002977:2254440:225727322572732257731459Methylococcus capsulatus str. Bath, complete genomeDNA polymerase III, chi subunit, putative5e-0960.1