Pre_GI Gene

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Host: NC_017270 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_017270:2500815 Vibrio cholerae LMA3984-4 chromosome chromosome I, complete

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
2500815250236515512-isopropylmalate synthaseQuickGO ontologyBLASTP
2502477250356810923-isopropylmalate dehydrogenaseQuickGO ontologyBLASTP
2503626250502914043-isopropylmalate dehydratase large subunitQuickGO ontologyBLASTP
250504525056476033-isopropylmalate dehydratase small subunitQuickGO ontologyBLASTP
25057482506539792hypothetical proteinBLASTP
2506761250683373tRNA-ThrQuickGO ontology
2510248251032073tRNA-AlaQuickGO ontologyBLASTP
2510329251040173tRNA-ValQuickGO ontologyBLASTP
25120342512153120hypothetical protein
251250225137251224HD-GYP domain-containing proteinQuickGO ontologyBLASTP
2513923251400482tRNA-LeuQuickGO ontology
25141952514668474transmembrane proteinQuickGO ontologyBLASTP
251477425158441071PermeaseQuickGO ontologyBLASTP
251584825169481101permeaseQuickGO ontologyBLASTP
251714225186531512cytosol aminopeptidaseQuickGO ontologyBLASTP
25187222519186465DNA polymerase III subunit chiQuickGO ontologyBLASTP
251928025221412862valyl-tRNA synthetaseQuickGO ontologyBLASTP