Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1372229 Shigella boydii Sb227, complete genome

Start: 1372229, End: 1372762, Length: 534

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007613:1353500:137279113727911373354564Shigella boydii Sb227, complete genomeputative tail fiber assembly protein7e-50196
NC_006905:2355290:235775923577592358163405Salmonella enterica subsp. enterica serovar Choleraesuis strbacteriophage tail fiber assembly protein (pseudogene)4e-21100
NC_007712:1182518:119294511929451193556612Sodalis glossinidius str. 'morsitans', complete genomehypothetical protein7e-2096.7
NC_012751:899394:915111915111915647537Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completephage tail assembly chaperone2e-1891.7
NC_011740:621408:625989625989626549561Escherichia fergusonii ATCC 35469, complete genomehypothetical protein from phage origin1e-1789.4
NC_016810:2027311:204179520417952042394600Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage tail protein2e-1685.5
NC_011205:2137696:214882021488202149389570Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tail fiber assembly protein2e-1685.1
NC_011294:2009388:202051320205132021082570Salmonella enterica subsp. enterica serovar Enteritidis strphage tail protein2e-1685.1
NC_016856:2085283:209563220956322096201570Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative tail fiber assembly protein2e-1685.1
NC_016863:2029340:204382420438242044393570Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1hypothetical protein2e-1685.1
NC_017046:2026672:204115620411562041725570Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage tail protein2e-1685.1
NC_011094:2115750:212749021274902128065576Salmonella enterica subsp. enterica serovar Schwarzengrund strtail fiber assembly protein1e-1479
NC_010102:931055:940063940063940638576Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1478.6
NC_003198:2297837:230037223003722300827456Salmonella enterica subsp. enterica serovar Typhi str. CT18,bacteriophage tail fiber assembly protein (pseudogene)4e-1374.3
NC_004631:685357:703886703886704341456Salmonella enterica subsp. enterica serovar Typhi Ty2, complete4e-1374.3
NC_011094:688626:688626688626689144519Salmonella enterica subsp. enterica serovar Schwarzengrund strbacteriophage tail protein9e-1372.8
NC_003198:1867456:188947118894711889989519Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative bacteriophage tail protein2e-1272.4
NC_011274:2325840:232854423285442328834291Salmonella enterica subsp. enterica serovar Gallinarum str. 287/912e-1272
NC_011080:1166951:117352511735251174052528Salmonella enterica subsp. enterica serovar Newport str. SL254,caudovirales tail fibre assembly protein2e-1272
NC_006905:1342474:134886413488641349382519Salmonella enterica subsp. enterica serovar Choleraesuis strhypothetical prophage protein1e-1169.3
NC_011083:2375061:238241423824142382941528Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative phage tail fiber assembly protein1e-1065.9
NC_010102:683444:710448710448710975528Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1065.9
NC_003197:2327474:233483423348342335361528Salmonella typhimurium LT2, complete genomeputative phage tail fiber assembly protein1e-1065.9
NC_016810:2325190:233255023325502333077528Salmonella enterica subsp. enterica serovar Typhimurium strputative bacteriophage tail fiber assembly protein1e-1065.9
NC_016856:2379027:238638723863872386914528Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative phage tail fiber assembly protein1e-1065.9
NC_016857:2325190:233255023325502333077528Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative phage tail fiber assembly protein1e-1065.9
NC_016860:2323017:233037723303772330904528Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-1065.9
NC_016863:2324293:233457923345792335106528Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative phage tail fiber assembly protein1e-1065.9
NC_017046:2324554:233191423319142332441528Salmonella enterica subsp. enterica serovar Typhimurium str. 798bacteriophage tail fiber assembly protein1e-1065.9
NC_012967:786534:794897794897795295399Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein4e-0960.8
NC_011750:2928990:293870429387042939114411Escherichia coli IAI39 chromosome, complete genomeputative tail fiber assembly protein (possibly partial)8e-0960.1
NC_014562:1698253:172105917210591721649591Pantoea vagans C9-1 chromosome, complete genomeTail fiber assembly protein8e-0856.6
NC_014306:103545:131102131102131692591Erwinia billingiae Eb661, complete genomePhage tail assembly chaperone gp382e-0755.5
NC_016857:2027311:204179520417952042121327Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74tail fiber assembly protein3e-0754.7
NC_013508:2587913:259568325956832596264582Edwardsiella tarda EIB202, complete genomephage tail assembly chaperone gp384e-0754.3