Pre_GI: BLASTP Hits

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Query: NC_007607:87000:107005 Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequence

Start: 107005, End: 107862, Length: 858

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017319:192482:209331209331210188858Shigella flexneri 2002017 plasmid pSFxv_1, complete sequenceRepA4e-134477
NC_010660:175200:193116193116193973858Shigella boydii CDC 3083-94 plasmid pBS512_211, complete sequenceIncFII replication initiation protein RepA14e-134477
NC_004851:191709:209448209448210305858Shigella flexneri 2a str. 301 plasmid pCP301, complete sequenceRepA, replication protein4e-134477
NC_007608:97092:112308112308113165858Shigella boydii Sb227 plasmid pSB4_227, complete sequenceRepA4e-134477
NC_009787:17344:290512905129908858Escherichia coli E24377A plasmid pETEC_35, complete sequencereplication initiation protein RepA3e-127454
NC_011749:34056:510235102351892870Escherichia coli UMN026 plasmid p1ESCUM, complete sequencereplication protein6e-127453
NC_009378:106193:114854114854115717864Yersinia pestis Pestoides F plasmid MT, complete sequencereplication protein1e-104379
NC_016846:24500:382223822239079858Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,replication initiation protein RepA1e-103375
NC_012752:1:11840840Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) plasmidplasmid replication initiator protein3e-1479.3