Pre_GI: BLASTP Hits

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Query: NC_007384:1737885:1738985 Shigella sonnei Ss046, complete genome

Start: 1738985, End: 1739347, Length: 363

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013941:1857724:187792718779271878289363Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-64242
NC_017328:1835108:183804318380431838405363Shigella flexneri 2002017 chromosome, complete genomePlasmid maintenance system antidote protein, XRE family3e-63239
NC_004337:1783645:178472317847231785085363Shigella flexneri 2a str. 301, complete genomehypothetical protein3e-63239
NC_011750:1809943:182922218292221829506285Escherichia coli IAI39 chromosome, complete genome2e-48190
NC_002695:2056545:207364120736412073925285Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein4e-47186
NC_011353:1971145:198824119882411988525285Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeHigA family addiction module antidote protein4e-47186
NC_013008:1971662:198721719872171987501285Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeDNA-binding transcriptional regulator4e-47186
NC_005126:3485330:350492235049223505212291Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-2097.8
NC_013889:1740858:175184017518401752157318Thioalkalivibrio sp. K90mix chromosome, complete genomeplasmid maintenance system antidote protein, XRE family2e-1374.3
NC_015694:48344:614961496463315Runella slithyformis DSM 19594 plasmid pRUNSL03, complete sequenceplasmid maintenance system antidote protein, XRE family1e-1168.6
NC_019940:203718:210322210322210603282Thioflavicoccus mobilis 8321 chromosome, complete genomeHigA family addiction module antidote protein8e-1165.9
NC_009483:4434375:446194244619424462226285Geobacter uraniireducens Rf4 chromosome, complete genomeXRE family plasmid maintenance system antidote protein3e-1063.9
NC_019940:2098902:210830321083032108551249Thioflavicoccus mobilis 8321 chromosome, complete genomeHigA family addiction module antidote protein1e-0961.6
NC_017511:852260:864713864713865024312Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomePlasmid maintenance system antidote protein, XRE family1e-0858.9
NC_011035:933269:948316948316948627312Neisseria gonorrhoeae NCCP11945 chromosome, complete genomePlasmid maintenance system antidote protein, XRE family1e-0858.9
NC_017505:1013311:101984310198431020154312Neisseria meningitidis alpha710 chromosome, complete genomeHTH-type transcriptional regulator1e-0858.5
NC_014011:1354261:1358334135833413594551122Aminobacterium colombiense DSM 12261 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family2e-0858.2
NC_015563:3511951:351478035147803515082303Delftia sp. Cs1-4 chromosome, complete genomeXRE family plasmid maintenance system antidote protein3e-0857.4
NC_021150:4201965:423203442320344232321288Azotobacter vinelandii CA6, complete genomeantitoxin protein4e-0857
NC_012560:4201969:423203842320384232325288Azotobacter vinelandii DJ, complete genomeantitoxin protein4e-0857
NC_007677:771168:828581828581828898318Salinibacter ruber DSM 13855, complete genomeaddiction module antidote protein, HigA family3e-0857
NC_014032:825793:925578925578925895318Salinibacter ruber M8 chromosome, complete genomePlasmid maintenance system antidote protein3e-0857
NC_011146:2200142:220804622080462208348303Geobacter bemidjiensis Bem, complete genomeplasmid maintenance system antidote protein, XRE family3e-0857
NC_015385:965341:9872289872289883341107Treponema succinifaciens DSM 2489 chromosome, complete genomeplasmid maintenance system antidote protein, XRE family1e-0755.1
NC_010682:3313944:3320844332084433219741131Ralstonia pickettii 12J chromosome 1, complete sequenceplasmid maintenance system antidote protein, XRE family1e-0755.1
NC_011666:2259447:228055822805582280839282Methylocella silvestris BL2, complete genomeplasmid maintenance system antidote protein, XRE family2e-0754.7
NC_011060:2099255:212090821209082121228321Pelodictyon phaeoclathratiforme BU-1, complete genomeplasmid maintenance system antidote protein, XRE family2e-0754.3
NC_014722:846084:8924778924778936491173Burkholderia rhizoxinica HKI 454, complete genomevirulence-associated protein I3e-0753.9
NC_014722:1467996:147187714718771472230354Burkholderia rhizoxinica HKI 454, complete genomevirulence-associated protein A3e-0753.9
NC_012778:229503:2377682377682388201053Eubacterium eligens ATCC 27750, complete genomehypothetical protein3e-0753.5
NC_015410:3209954:321563332156333215920288Pseudomonas mendocina NK-01 chromosome, complete genomeantitoxin protein4e-0753.5
NC_004369:3027539:303409030340903034425336Corynebacterium efficiens YS-314, complete genomeputative virulence-associated protein4e-0753.5
NC_014761:2248000:224929522492952249597303Oceanithermus profundus DSM 14977 chromosome, complete genomeplasmid maintenance system antidote protein, xre family4e-0753.1
NC_003902:4989855:500635450063545006644291Xanthomonas campestris pv. campestris str. ATCC 33913, completevirulence associated protein6e-0752.8
NC_007086:5064053:507903950790395079329291Xanthomonas campestris pv. campestris str. 8004, complete genomevirulence associated protein6e-0752.8
NC_016745:2028424:205189620518962052180285Oceanimonas sp. GK1 chromosome, complete genomeXRE family transcriptional regulator1e-0652
NC_014319:587977:5901115901115911811071Leuconostoc gasicomitatum LMG 18811, complete genomeDNA-binding protein1e-0651.6
NC_010995:4297361:431725843172584317575318Cellvibrio japonicus Ueda107, complete genomehelix-turn-helix domain protein2e-0651.2
NC_016629:3789554:382642838264283826736309Desulfovibrio africanus str. Walvis Bay chromosome, completeplasmid maintenance system antidote protein3e-0650.8
NC_008751:1736512:175481817548181755120303Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomeplasmid maintenance system antidote protein, XRE family4e-0650.1
NC_008358:2808299:282618928261892826482294Hyphomonas neptunium ATCC 15444, complete genomeaddiction module antidote protein, HigA family7e-0649.3
NC_013422:1755875:176959317695931769883291Halothiobacillus neapolitanus c2, complete genomeplasmid maintenance system antidote protein, XRE family7e-0649.3
NC_014973:5099543:510360051036005103914315Geobacter sp. M18 chromosome, complete genomeXRE family plasmid maintenance system antidote protein7e-0649.3
NC_017271:4852351:487060048706004870890291Xanthomonas campestris pv. raphani 756C chromosome, completeHigA family addiction module antidote protein8e-0649.3