Pre_GI: BLASTP Hits

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Query: NC_006905:4638707:4672005 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 4672005, End: 4672739, Length: 735

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:4716000:474932047493204750054735Salmonella enterica subsp. enterica serovar Paratyphi C strainaspartate racemase6e-134476
NC_015761:4355335:437758243775824378316735Salmonella bongori NCTC 12419, complete genomeaspartate racemase1e-120432
NC_014618:4657719:468570046857004686434735Enterobacter cloacae SCF1 chromosome, complete genomeaspartate racemase1e-103375
NC_010498:1094000:110588911058891106608720Escherichia coli SMS-3-5, complete genomeaspartate racemase2e-60232
NC_014500:1646854:166670616667061667422717Dickeya dadantii 3937 chromosome, complete genomeputative aspartate racemase2e-49196
NC_002929:52500:536235362354357735Bordetella pertussis Tohama I, complete genomeputative aspartate/glutamate racemase8e-33140
NC_017223:51180:536235362354357735Bordetella pertussis CS chromosome, complete genomeputative aspartate/glutamate racemase8e-33140
NC_007948:4620661:462609346260934626818726Polaromonas sp. JS666, complete genomeAspartate racemase1e-30133
NC_000961:597385:597385597385598071687Pyrococcus horikoshii OT3, complete genomeaspartate racemase7e-30130
NC_013421:1954915:195752019575201958236717Pectobacterium wasabiae WPP163, complete genomeaspartate racemase2e-29129
NC_009142:5647737:565601356560135656768756Saccharopolyspora erythraea NRRL 2338, complete genomeaspartate racemase2e-28125
NC_011295:1120584:112754711275471128266720Coprothermobacter proteolyticus DSM 5265, complete genomeaspartate racemase7e-28124
NC_015677:1460000:146540814654081466145738Ramlibacter tataouinensis TTB310 chromosome, complete genomeaspartate racemase8e-25114
NC_016830:4639388:4645685464568546471811497Pseudomonas fluorescens F113 chromosome, complete genomeaspartate racemase2e-24112
NC_017190:466236:479815479815480495681Bacillus amyloliquefaciens LL3 chromosome, complete genomeamino acid racemase2e-1685.9
NC_014551:483773:493886493886494566681Bacillus amyloliquefaciens DSM 7, complete genomeamino acid racemase2e-1685.9
NC_017188:461177:481365481365482045681Bacillus amyloliquefaciens TA208 chromosome, complete genomeaspartate racemase3e-1582
NC_017191:467207:487387487387488067681Bacillus amyloliquefaciens XH7 chromosome, complete genomeamino acid racemase3e-1582
NC_020410:495184:514630514630515310681Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeputative amino-acid racemase6e-1581.3
NC_020272:3396800:342665734266573427337681Bacillus amyloliquefaciens IT-45, complete genomeaspartate racemase1e-1480.5
NC_019842:484933:522218522218522898681Bacillus amyloliquefaciens subsp. plantarum AS43.3 chromosome,aspartate racemase1e-1479.7
NC_009725:496443:528210528210528890681Bacillus amyloliquefaciens FZB42, complete genomeRacX1e-1377
NC_003413:1521080:155854015585401559235696Pyrococcus furiosus DSM 3638, complete genomeputative aspartate racemase1e-1273.6
NC_019942:987134:101040910104091011083675Aciduliprofundum sp. MAR08-339, complete genomeaspartate racemase3e-1272
NC_016609:6750111:678376867837686784457690Niastella koreensis GR20-10 chromosome, complete genomeaspartate racemase2e-1169.3
NC_013926:829665:834044834044834721678Aciduliprofundum boonei T469 chromosome, complete genomeaspartate racemase3e-1168.6
NC_020410:2509057:251292025129202513618699Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completePutative aspartate racemase3e-1065.9
NC_014551:2510000:254602625460262546724699Bacillus amyloliquefaciens DSM 7, complete genomeAspartate racemase6e-1064.7
NC_011883:1182000:119259811925981193314717Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,aspartate racemase2e-0963.2
NC_013192:1824174:182969618296961830391696Leptotrichia buccalis DSM 1135, complete genomeaspartate racemase3e-0858.9
NC_021182:554000:564461564461565159699Clostridium pasteurianum BC1, complete genomeaspartate racemase3e-0858.9
NC_021182:2536000:255080925508092551507699Clostridium pasteurianum BC1, complete genomeaspartate racemase3e-0858.9
NC_013665:415998:434716434716435417702Methanocella paludicola SANAE, complete genomeaspartate racemase5e-0858.2
NC_014011:1264165:127799512779951278681687Aminobacterium colombiense DSM 12261 chromosome, complete genomeaspartate racemase6e-0857.8
NC_015500:159199:176739176739177431693Treponema brennaborense DSM 12168 chromosome, complete genomeaspartate racemase2e-0756.2
NC_013446:2062862:207646020764602077155696Comamonas testosteroni CNB-2, complete genomeaspartate racemase4e-0755.1
NC_015556:515641:524448524448525146699Pseudomonas fulva 12-X chromosome, complete genomeaspartate racemase7e-0754.3
NC_011026:1681852:169944916994491700183735Chloroherpeton thalassium ATCC 35110, complete genomeaspartate racemase8e-0754.3
NC_015681:401084:407809407809408528720Thermodesulfatator indicus DSM 15286 chromosome, complete genomeaspartate racemase1e-0653.9
NC_008392:1029134:105709610570961057800705Burkholderia cepacia AMMD chromosome 3, complete sequenceaspartate racemase3e-0652.4
NC_016048:3611146:362779336277933628488696Oscillibacter valericigenes Sjm18-20, complete genomeaspartate racemase5e-0651.6
NC_014006:924417:936197936197936892696Sphingobium japonicum UT26S chromosome 1, complete genomeputative aspartate/glutamate racemase6e-0651.2