Pre_GI: BLASTP Hits

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Query: NC_006905:401154:408223 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 408223, End: 409983, Length: 1761

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012125:1360593:1369880136988013716311752Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein0810
NC_011083:403022:4109664109664129692004Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,bifunctional tail protein6e-58225
NC_011205:645591:6535126535126555152004Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853bifunctional tail protein4e-57223
NC_011147:2463299:2485113248511324871162004Salmonella enterica subsp. enterica serovar Paratyphi A strtailspike4e-57223
NC_006511:2467763:2489577248957724915802004Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCtailspike4e-57223
NC_016860:397138:4051284051284071312004Salmonella enterica subsp. enterica serovar Typhimurium strtail spike protein7e-57222
NC_013364:2612822:2618953261895326208901938Escherichia coli O111:H- str. 11128, complete genomeputative tail spike protein2e-49197
NC_011740:2072173:2082356208235620847942439Escherichia fergusonii ATCC 35469, complete genomeputative head-binding domain of phage tailspike protein2e-48194
NC_011742:2489000:2495794249579424987392946Escherichia coli S88 chromosome, complete genomeEndo-alpha-sialidase, phage head protein7e-48192
NC_008563:2565876:2572697257269725756422946Escherichia coli APEC O1, complete genomeputative endo-alpha-sialidase7e-48192
NC_011748:2655989:2668877266887726708561980Escherichia coli 55989, complete genomehypothetical protein; putative head-binding domain2e-47190
CU928145:2655989:2668877266887726708561980Escherichia coli 55989 chromosome, complete genomehypothetical protein; putative head-binding domain2e-47190
NC_007946:2593500:2599874259987426028192946Escherichia coli UTI89, complete genomeendo-alpha-sialidase4e-47189
NC_013361:3254000:3266980326698032691032124Escherichia coli O26:H11 str. 11368 chromosome, complete genometailspike protein6e-47189
NC_010067:2529750:2562294256229425644442151Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein2e-46187
NC_016902:1475521:1482804148280414850022199Escherichia coli KO11FL chromosome, complete genomeP22 tailspike protein head-binding protein3e-45183
CP002516:1475521:1482804148280414850022199Escherichia coli KO11, complete genomeP22 tailspike protein head-binding protein3e-45183
CP002185:2608000:2620855262085526230532199Escherichia coli W, complete genomehypothetical protein3e-45183
NC_017328:335160:3430893430893442431155Shigella flexneri 2002017 chromosome, complete genomeTail spike protein1e-42175
NC_020418:3102460:3110149311014931120861938Morganella morganii subsp. morganii KT, complete genometail protein1e-41171
NC_009800:320115:3302403302403321501911Escherichia coli HS, complete genomehypothetical protein4e-31136
NC_012214:1588573:1600576160057616027682193Erwinia pyrifoliae Ep1/96, complete genomeExopolysaccharide biosynthesis protein WceF (synonym for CpsF; similar to AmsF)9e-1582.4
NC_013961:2260250:2284358228435822865892232Erwinia amylovora, complete genomeAmylovoran biosynthesis protein amsF precursor1e-1481.6
NC_013971:2297777:2321885232188523241162232Erwinia amylovora ATCC 49946 chromosome, complete genomeamylovoran biosynthesis protein1e-1481.6
NC_014562:2049921:2074597207459720768132217Pantoea vagans C9-1 chromosome, complete genomeExtracellular polysaccharide biosynthesis protein wceF precursor7e-1479.3
NC_014837:2803447:2826372282637228285822211Pantoea sp. At-9b chromosome, complete genomeP22 tailspike protein head-binding protein1e-1378.6
NC_016816:1676460:1676460167646016786702211Pantoea ananatis LMG 5342, complete genomeextracellular polysaccharide biosynthesis glycosyltransferase7e-1272.8
NC_013956:2749685:2777710277771027799202211Pantoea ananatis LMG 20103 chromosome, complete genomeAmsF7e-1272.8
NC_010694:1502019:1502019150201915042412223Erwinia tasmaniensis, complete genomeExopolysaccharide biosynthesis protein7e-1272.8