Pre_GI: BLASTP Hits

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Query: NC_006905:2805877:2806369 Salmonella enterica subsp. enterica serovar Choleraesuis str

Start: 2806369, End: 2807049, Length: 681

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated from a 58-year old man with sepsis and has been shown to be resistant to ciprofloxacin and ceftriaxone. This organism also causes severe disease (swine paratyphoid) in pigs. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011080:2789744:279147727914772792157681Salmonella enterica subsp. enterica serovar Newport str. SL254,DTW domain protein6e-131466
NC_011149:2701916:270240827024082703088681Salmonella enterica subsp. enterica serovar Agona str. SL483,DTW domain protein2e-130464
NC_010102:283364:301811301811302491681Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein4e-130463
NC_003198:2703013:270474627047462705426681Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein9e-130462
NC_004631:283289:299423299423300103681Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein9e-130462
CP002185:2889656:289014428901442890842699Escherichia coli W, complete genomeconserved protein2e-115414
CP002516:1196000:121501412150141215712699Escherichia coli KO11, complete genomeDTW domain containing protein2e-115414
CU928160:2785792:278628027862802786978699Escherichia coli IAI1 chromosome, complete genomeconserved hypothetical protein1e-114412
NC_009648:3192483:319248331924833193181699Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomehypothetical protein2e-106385
NC_013850:1198134:121730212173021218000699Klebsiella variicola At-22 chromosome, complete genomeDTW domain containing protein5e-106383
NC_020211:4168189:416818941681894168884696Serratia marcescens WW4, complete genomehypothetical protein9e-77286
NC_009832:4136878:413687841368784137582705Serratia proteamaculans 568, complete genomeDTW domain containing protein3e-76284
NC_015566:4205854:420585442058544206558705Serratia sp. AS12 chromosome, complete genomeDTW domain-containing protein2e-75281
NC_015733:1398083:141844214184421419152711Pseudomonas putida S16 chromosome, complete genomeDTW domain-containing protein6e-58223
NC_007948:5026122:503786050378605038618759Polaromonas sp. JS666, complete genomehypothetical protein1e-53209
NC_018678:2382708:238792223879222388614693Alteromonas macleodii str. 'English Channel 673' chromosome,hypothetical protein7e-53206
NC_014931:2511423:251544525154452516218774Variovorax paradoxus EPS chromosome, complete genomeDTW domain containing protein4e-50197
NC_010524:4788753:479368147936814794406726Leptothrix cholodnii SP-6, complete genomeDTW domain containing protein2e-43175
NC_015500:533528:536697536697537458762Treponema brennaborense DSM 12168 chromosome, complete genomeDTW domain containing protein8e-0960.5