Pre_GI: BLASTP Hits

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Query: NC_006155:3992818:4003499 Yersinia pseudotuberculosis IP 32953, complete genome

Start: 4003499, End: 4004086, Length: 588

Host Lineage: Yersinia pseudotuberculosis; Yersinia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is a fully virulent serotype I strain isolated from a human patient. Environmental bacterium that causes gastrointestinal disease. Specific virulence factors are encoded within pathogenicity islands (PAIs) that are required for the invasive phenotype associated with Yersinia infections. One key virulence plasmid contained by the three human-specific pathogens is pCD1/pYv, which encodes a type III secretion system for the delivery of virulence proteins that contribute to internalization into the host cell. This organism was first isolated in 1883 by Malassez and Vignal and is termed pseudotuberculosis since it causes lesions in the lung that are similar to those observed during tuberculosis infection. It is ubiquitous in the environment and is a food and waterborne pathogen that affects animals as well as humans by causing gastroenteritis like Yersinia enterocolitica.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010634:3905369:391499039149903915577588Yersinia pseudotuberculosis PB1/+, complete genomeputative transcriptional regulator, CadC1e-108392
NC_010465:733916:748971748971749558588Yersinia pseudotuberculosis YPIII, complete genomeputative transcriptional regulator, CadC2e-103374
NC_009708:692508:708541708541709128588Yersinia pseudotuberculosis IP 31758 chromosome, complete genomehypothetical protein9e-102369
NC_008800:3955284:396122039612203961819600Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,membrane protein2e-74278
NC_015224:3820338:383951838395183840099582Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,membrane protein7e-71266
NC_004741:3041294:309354530935453094150606Shigella flexneri 2a str. 2457T, complete genomehypothetical protein1e-31135
NC_004337:3049118:310405631040563104661606Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-31135
NC_017328:3088907:314242331424233143028606Shigella flexneri 2002017 chromosome, complete genomeMembrane protein1e-31135
NC_003197:367430:385573385573386337765Salmonella typhimurium LT2, complete genomeputative inner membrane protein1e-1066.6
NC_016810:366908:385057385057385821765Salmonella enterica subsp. enterica serovar Typhimurium strtransmembrane regulator1e-1066.6
NC_016856:365665:386264386264387028765Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein1e-1066.6
NC_016857:366908:385057385057385821765Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein1e-1066.6
NC_016863:367404:385553385553386317765Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein1e-1066.6
NC_017046:366905:385084385084385818735Salmonella enterica subsp. enterica serovar Typhimurium str. 798transmembrane regulator1e-1066.2
NC_010102:2721374:273210127321012732865765Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-1065.5
NC_006511:2467763:247842124784212479155735Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transmembrane regulator3e-1065.1
NC_011083:403022:432730432730433464735Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative transmembrane regulator3e-1065.1
NC_011147:2463299:247395724739572474691735Salmonella enterica subsp. enterica serovar Paratyphi A strtransmembrane regulator3e-1065.1
NC_006905:401154:430112430112430876765Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein3e-1065.1
NC_011080:383441:390063390063390797735Salmonella enterica subsp. enterica serovar Newport str. SL254,putative transmembrane regulator4e-1064.7
NC_011149:361765:368387368387369121735Salmonella enterica subsp. enterica serovar Agona str. SL483,putative transmembrane regulator4e-1064.7
NC_011094:380428:398373398373399107735Salmonella enterica subsp. enterica serovar Schwarzengrund strtransmembrane regulator4e-1064.3
NC_004631:2584244:259491425949142595648735Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transmembrane regulator8e-1063.5
NC_003198:378844:385465385465386199735Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transmembrane regulator8e-1063.5
NC_011294:346915:364877364877365641765Salmonella enterica subsp. enterica serovar Enteritidis strtransmembrane regulator8e-1063.5
NC_016832:2581145:259181525918152592549735Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transmembrane regulator8e-1063.5
NC_012125:373630:380252380252380986735Salmonella enterica subsp. enterica serovar Paratyphi C straintransmembrane regulator1e-0962.8
NC_015663:1:210462104621852807Enterobacter aerogenes KCTC 2190 chromosome, complete genomeputative transcriptional regulator5e-0857.4
NC_020064:1962172:198639919863991986998600Serratia marcescens FGI94, complete genomeDNA-binding protein with winged-HTH domain2e-0755.8
NC_010102:2721374:272890927289092729652744Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein2e-0755.5
NC_012125:373630:383397383397384176780Salmonella enterica subsp. enterica serovar Paratyphi C straintransmembrane regulator4e-0754.7
NC_011274:376970:386772386772387515744Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91transmembrane regulator4e-0754.7
NC_016831:2627515:263504826350482635791744Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative transmembrane regulator4e-0754.7
NC_011094:380428:401567401567402310744Salmonella enterica subsp. enterica serovar Schwarzengrund strresponse regulator6e-0753.9
NC_014618:1700784:170658417065841707351768Enterobacter cloacae SCF1 chromosome, complete genometranscriptional regulator CadC8e-0753.5
NC_020064:3998715:406168040616804062153474Serratia marcescens FGI94, complete genomehypothetical protein8e-0753.5
NC_006511:2467763:247528924752892475972684Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCpossible transmembrane regulator1e-0653.1
NC_011147:2463299:247082524708252471508684Salmonella enterica subsp. enterica serovar Paratyphi A strtransmembrane regulator1e-0653.1
NC_011083:403022:435911435911436654744Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,putative response regulator1e-0653.1
NC_011080:383441:393244393244393987744Salmonella enterica subsp. enterica serovar Newport str. SL254,putative response regulator1e-0653.1
NC_004631:2584244:259171125917112592454744Salmonella enterica subsp. enterica serovar Typhi Ty2, completepossible transmembrane regulator1e-0653.1
NC_003198:378844:388659388659389402744Salmonella enterica subsp. enterica serovar Typhi str. CT18,possible transmembrane regulator1e-0653.1
NC_016832:2581145:258861225886122589355744Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,transmembrane regulator1e-0653.1
NC_011149:361765:371579371579372322744Salmonella enterica subsp. enterica serovar Agona str. SL483,putative response regulator2e-0652.4
NC_013956:1994970:200213620021362003050915Pantoea ananatis LMG 20103 chromosome, complete genomeYqeI3e-0652
NC_016816:2508204:251985925198592520752894Pantoea ananatis LMG 5342, complete genomeputative transcriptional regulator3e-0651.6
NC_010694:436500:453335453335454240906Erwinia tasmaniensis, complete genomePutative transcriptional regulator5e-0650.8
NC_015663:1934863:194734419473441947895552Enterobacter aerogenes KCTC 2190 chromosome, complete genomeCadC family transcriptional regulator7e-0650.4
NC_020181:3518396:352330035233003523851552Enterobacter aerogenes EA1509E, complete genomeputative transcriptional regulatory protein7e-0650.4
NC_016612:1840325:185718718571871857753567Klebsiella oxytoca KCTC 1686 chromosome, complete genomeputative transcriptional regulatory protein7e-0650.4