Pre_GI: BLASTP Hits

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Query: NC_005126:2222000:2225254 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 2225254, End: 2226519, Length: 1266

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012962:3060063:3078973307897330802381266Photorhabdus asymbiotica, complete genomesimilar to tetracycline-efflux transporter0685
NC_003919:5056650:5075447507544750767121266Xanthomonas axonopodis pv. citri str. 306, complete genometetracycline-efflux transporter6e-49195
NC_005823:2840000:2861270286127028624991230Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130permease3e-48192
NC_015277:380624:3984053984053996131209Sphingobacterium sp. 21 chromosome, complete genomemajor facilitator superfamily MFS_18e-48191
NC_009483:936000:9406069406069418441239Geobacter uraniireducens Rf4 chromosome, complete genomemajor facilitator transporter3e-45182
NC_013062:627000:6750276750276762621236Flavobacteriaceae bacterium 3519-10, complete genomeTetracycline efflux protein TetA1e-44181
NC_012668:3037345:3048365304836530496391275Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTetA3e-38159
NC_010410:3606826:3641859364185936431331275Acinetobacter baumannii AYE, complete genomeTetracycline resistance protein, class A (TETA(A))3e-38159
NC_009838:81913:8960389603907931191Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceTetA2e-37156
NC_015161:2060369:2064492206449220657331242Deinococcus proteolyticus MRP chromosome, complete genomemajor facilitator superfamily MFS_13e-37156
NC_010410:3606826:3671432367143236726071176Acinetobacter baumannii AYE, complete genomeTetracycline resistance protein, class G (TETA(G))6e-34145
NC_012032:448161:4525394525394537501212Chloroflexus sp. Y-400-fl, complete genomemajor facilitator superfamily MFS_12e-32140
NC_011586:268927:2922162922162933431128Acinetobacter baumannii AB0057 chromosome, complete genometetracycline resistance protein, class A1e-30134
NC_017171:280762:2856542856542868891236Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeTetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter)1e-30134
CU928145:4950723:4974007497400749752601254Escherichia coli 55989 chromosome, complete genomeTetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter)3e-30133
NC_011748:4950723:4974007497400749752601254Escherichia coli 55989, complete genomeTetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter)3e-30133
NC_011749:34056:4355043550448031254Escherichia coli UMN026 plasmid p1ESCUM, complete sequencetetracycline efflux transporter3e-30133
NC_020418:448687:4588664588664600711206Morganella morganii subsp. morganii KT, complete genomemajor facilitator superfamily protein5e-30132
NC_003384:157158:1779351779351791401206Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidtetracycline resistance protein1e-29131
NC_011083:4547825:4606940460694046081451206Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tetracycline resistance protein, class B1e-29131
NC_013365:92973:9669896698979031206Escherichia coli O111:H- str. 11128 plasmid pO111_1, completetetracycline resistance protein TetB1e-29131
NC_016860:4055117:4063086406308640642911206Salmonella enterica subsp. enterica serovar Typhimurium strtetracycline resistance protein1e-29131
NC_017328:1075535:1106058110605811072631206Shigella flexneri 2002017 chromosome, complete genomeTetracycline resistance protein, class B (TetA(B)) (Metal- tetracycline/H(+) antiporter)1e-29131
NC_017328:1075535:1119452111945211206571206Shigella flexneri 2002017 chromosome, complete genomeTetracycline resistance protein, class B (TetA(B)) (Metal- tetracycline/H(+) antiporter)1e-29131
NC_017387:247462:2876772876772888701194Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometetracycline resistance protein, class G (TETA(G))1e-29131
NC_009349:3396:4109410953261218Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completetetracycline resistance protein TetA(E)5e-29129
NC_010519:1963256:1979596197959619807981203Haemophilus somnus 2336 chromosome, complete genomemajor facilitator transporter6e-26119
NC_010939:405477:4158074158074169461140Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeTetracycline resistance protein, class G1e-25117
NC_016641:5671186:5699024569902457002201197Paenibacillus terrae HPL-003 chromosome, complete genomemajor facilitator superfamily protein2e-23110
NC_003210:870587:8705878705878718071221Listeria monocytogenes EGD-e, complete genomehypothetical protein2e-21103
NC_013766:906550:9065509065509077701221Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein2e-21103
NC_002932:937157:9410909410909423581269Chlorobium tepidum TLS, complete genomedrug resistance protein, putative3e-20100
NC_005042:1719055:1719055171905517203141260Prochlorococcus marinus subsp. marinus str. CCMP1375, completePermease of the major facilitator superfamily2e-1997.1
NC_011149:1578451:1592785159278515940261242Salmonella enterica subsp. enterica serovar Agona str. SL483,major facilitator superfamily MFS_19e-1891.7
NC_003197:1611302:1621409162140916226501242Salmonella typhimurium LT2, complete genomeputative multidrug efflux protein2e-1790.9
NC_016810:1576636:1578262157826215795031242Salmonella enterica subsp. enterica serovar Typhimurium strputative multidrug efflux protein2e-1790.9
NC_016856:1621279:1631386163138616326271242Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative multidrug efflux protein2e-1790.9
NC_016857:1576636:1578262157826215795031242Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative multidrug efflux protein2e-1790.9
NC_016860:1614280:1619099161909916203401242Salmonella enterica subsp. enterica serovar Typhimurium strputative multidrug efflux protein2e-1790.9
NC_016863:1575488:1579577157957715808181242Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative multidrug efflux protein2e-1790.9
NC_017046:1574057:1578146157814615793871242Salmonella enterica subsp. enterica serovar Typhimurium str. 798multidrug efflux protein2e-1790.9
NC_011094:1584038:1588857158885715900981242Salmonella enterica subsp. enterica serovar Schwarzengrund strmajor facilitator superfamily protein2e-1790.5
NC_017195:2498113:2523659252365925248611203Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completemultidrug resistance protein 24e-1789.7
NC_003198:1463253:1472365147236514736061242Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative multidrug efflux protein5e-1789.4
NC_016047:2658000:2682573268257326837751203Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completemultidrug resistance protein 21e-1687.8
NC_000964:2702376:2716199271619927174011203Bacillus subtilis subsp. subtilis str. 168, complete genomemultidrug-efflux transporter2e-1687
NC_014976:684000:7008387008387020401203Bacillus subtilis BSn5 chromosome, complete genomeefflux transporter3e-1686.7
NC_010175:448020:4523984523984536081211Chloroflexus aurantiacus J-10-fl, complete genome6e-1685.5
NC_019896:1483073:1508442150844215096441203Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeMultidrug resistance protein 26e-1685.5
NC_020244:2509000:2531624253162425328261203Bacillus subtilis XF-1, complete genomeefflux transporter9e-1685.1
NC_015761:1488807:1498916149891615001541239Salmonella bongori NCTC 12419, complete genomemultidrug efflux protein6e-1479
UCMB5137:1:2696926969281711203Bacillus atrophaeus UCMB-5137efflux transporter8e-1478.6
NC_005070:2374850:2395742239574223970401299Synechococcus sp. WH 8102, complete genomemultidrug efflux transporter, MFS family3e-1376.6
NC_014479:2505823:2524216252421625254181203Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeefflux transporter7e-1375.5
NC_014041:3662906:3676002367600236772161215Zunongwangia profunda SM-A87 chromosome, complete genomemultidrug-efflux transporter1e-1274.3
NC_014761:1981435:1999855199985520010391185Oceanithermus profundus DSM 14977 chromosome, complete genomemajor facilitator superfamily mfs_13e-1273.6
NC_015387:2072237:2085508208550820867041197Marinithermus hydrothermalis DSM 14884 chromosome, complete genomemajor facilitator superfamily MFS_15e-1272.8
NC_009091:1598044:1613061161306116143291269Prochlorococcus marinus str. MIT 9301, complete genomemultidrug efflux transporter, MFS family2e-1170.5
NC_009481:2081500:2086183208618320873761194Synechococcus sp. WH 7803 chromosome, complete genomemajor facilitator superfamily permease8e-1168.6
NC_013222:299683:3503113503113515251215Robiginitalea biformata HTCC2501, complete genomemultidrug-efflux transporter1e-1067.8
NC_014759:2438492:2449510244951024507451236Marivirga tractuosa DSM 4126 chromosome, complete genomemajor facilitator superfamily mfs_12e-0964.3
NC_003909:927955:9473589473589485601203Bacillus cereus ATCC 10987, complete genomemultidrug resistance protein2e-0963.9
NC_016935:2567039:2618956261895626201641209Paenibacillus mucilaginosus 3016 chromosome, complete genomemultidrug resistance protein5e-0962.8
NC_015690:2039215:2069428206942820706361209Paenibacillus mucilaginosus KNP414 chromosome, complete genomemultidrug resistance protein3e-0860.1
NC_020291:1045058:1045058104505810462511194Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomemultidrug resistance protein MdtG7e-0858.9
NC_013741:809030:8126488126488137301083Archaeoglobus profundus DSM 5631, complete genomemajor facilitator superfamily MFS_14e-0756.6
NC_013890:808791:8087918087918100621272Dehalococcoides sp. GT chromosome, complete genomemajor facilitator superfamily MFS_13e-0653.5
NC_007348:752692:7571607571607584101251Ralstonia eutropha JMP134 chromosome 2, complete sequenceMajor facilitator superfamily MFS_18e-0652