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Query: NC_005126:1265071:1268219 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 1268219, End: 1268479, Length: 261

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008563:3119284:3137704313770431392451542Escherichia coli APEC O1, complete genomeputative transposase for ISEc122e-25114
NC_014228:1712339:1722894172289417244381545Xenorhabdus nematophila ATCC 19061, complete genometransposase1e-1995.1
NC_014228:3534378:3551654355165435531981545Xenorhabdus nematophila ATCC 19061, complete genometransposase1e-1995.1
NC_015554:4824000:4826991482699148284541464Alteromonas sp. SN2 chromosome, complete genomeintegrase catalytic subunit1e-1478.6
NC_015554:4724245:4743404474340447444231020Alteromonas sp. SN2 chromosome, complete genomeintegrase catalytic subunit3e-1477
NC_010086:1816378:1846815184681518483711557Burkholderia multivorans ATCC 17616 chromosome 2, completeIntegrase catalytic region7e-1269.3
NC_010801:550270:5882805882805898361557Burkholderia multivorans ATCC 17616 chromosome 3, completeIS408a transposase7e-1269.3
NC_010087:319063:3350223350223365781557Burkholderia multivorans ATCC 17616 chromosome 3, completeIntegrase catalytic region7e-1269.3
NC_010805:575709:6269336269336284891557Burkholderia multivorans ATCC 17616 chromosome 2, completeIS408a transposase7e-1269.3
NC_009255:1105786:1127023112702311285791557Burkholderia vietnamiensis G4 chromosome 2, complete sequenceintegrase catalytic subunit7e-1269.3
NC_010529:296500:2972952972952987161422Cupriavidus taiwanensis plasmid pRALTA, complete sequencetransposase, IS21 family5e-1166.2
NC_008577:1455000:1463938146393814654791542Shewanella sp. ANA-3 chromosome 1, complete sequenceIntegrase, catalytic region1e-1065.5
NC_009349:78000:8019980199817401542Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completetransposase subunit 11e-1065.1
NC_009348:1064664:1077134107713410786751542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1065.1
NC_009348:47974:6152661526630671542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1065.1
NC_009348:2125698:2145116214511621466571542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1065.1
NC_009348:1475955:1530946153094615324871542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1065.1
NC_009348:3029963:3051855305185530533961542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1065.1
NC_009350:137645:1393901393901409311542Aeromonas salmonicida subsp. salmonicida A449 plasmid 5, completetransposase subunit 11e-1065.1
NC_009348:1347500:1358541135854113600821542Aeromonas salmonicida subsp. salmonicida A449, complete genometransposase subunit 11e-1065.1
NC_010086:1907959:1918168191816819197181551Burkholderia multivorans ATCC 17616 chromosome 2, completeIntegrase catalytic region3e-1063.9
NC_010804:996837:1021950102195010235001551Burkholderia multivorans ATCC 17616 chromosome 1, completeISBmu3 transposase3e-1063.9
NC_010805:530876:5555865555865571361551Burkholderia multivorans ATCC 17616 chromosome 2, completeISBmu3 transposase3e-1063.9
NC_010084:2484000:2501273250127325028231551Burkholderia multivorans ATCC 17616 chromosome 1, completeintegrase catalytic region3e-1063.9
NC_006513:38818:3881838818403771560Azoarcus sp. EbN1, complete genometransposase3e-1063.9
NC_008740:1484531:1502877150287715044181542Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region3e-1063.5
NC_008782:1917634:1939904193990419414271524Acidovorax sp. JS42, complete genomeIntegrase, catalytic region2e-0961.2
NC_015186:535727:5525885525885541051518Acidiphilium multivorum AIU301, complete genomeputative transposase for insertion sequence element4e-0960.1
NC_016812:3641786:3663067366306736646171551Sinorhizobium fredii HH103, complete genomeputative transposase y4uI5e-0959.7
NC_016812:258500:2692812692812708311551Sinorhizobium fredii HH103, complete genomeputative transposase for insertion sequence IS4085e-0959.7
NC_016812:4246542:4251400425140042529501551Sinorhizobium fredii HH103, complete genomeputative transposase for insertion sequence IS4085e-0959.7
NC_016815:1543308:1543308154330815448581551Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceTransposase for insertion sequence IS1326/IS13535e-0959.7
NC_016815:844350:8628668628668644161551Sinorhizobium fredii HH103 plasmid pSfHH103e complete sequenceTransposase for insertion sequence IS1326/IS13535e-0959.7
NC_008740:1815743:1826754182675418282981545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region6e-0959.3
NC_008740:220642:2331842331842347281545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region6e-0959.3
NC_008740:443274:4665664665664681101545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region8e-0958.9
NC_008740:683081:6830816830816846251545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region8e-0958.9
NC_008740:3520500:3521536352153635230801545Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region8e-0958.9
NC_007951:2904644:2927207292720729287601554Burkholderia xenovorans LB400 chromosome 1, complete sequencePutative transposase2e-0858.2
NC_012586:897148:920288920288921106819Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceTrm23a-like transposase, amino-terminus1e-0858.2
NC_017325:967598:9816259816259831751551Sinorhizobium meliloti SM11 chromosome, complete genomeTRm23a transposase2e-0857.8
NC_009428:1827352:1854220185422018557521533Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomeintegrase catalytic subunit2e-0857.8
NC_007384:1086025:1092084109208410936191536Shigella sonnei Ss046, complete genomeputative transposase3e-0857.4
NC_007384:1763375:1767851176785117693861536Shigella sonnei Ss046, complete genomeputative transposase3e-0857.4
NC_016822:1839739:1845837184583718473721536Shigella sonnei 53G, complete genometransposase3e-0857.4
NC_016822:2940000:2957005295700529585401536Shigella sonnei 53G, complete genometransposase3e-0857.4
NC_016822:267758:2755732755732771081536Shigella sonnei 53G, complete genometransposase3e-0857.4
NC_009484:318500:3242283242283257751548Acidiphilium cryptum JF-5 chromosome, complete genomeintegrase catalytic subunit2e-0857.4
NC_020304:752012:7688947688947704471554Desulfocapsa sulfexigens DSM 10523, complete genometransposase4e-0857
NC_020304:1222000:1242238124223812437911554Desulfocapsa sulfexigens DSM 10523, complete genometransposase4e-0857
NC_008536:9538891:9554722955472295560891368Solibacter usitatus Ellin6076, complete genomeIntegrase, catalytic region5e-0856.6
NC_015851:181721:1979011979011991661266Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceputative transposase5e-0856.6
NC_015851:89006:1122281122281134931266Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceputative transposase5e-0856.6
NC_015851:10915:1168211682129471266Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceputative transposase5e-0856.6
NC_008740:2989856:2990543299054329920841542Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region6e-0856.2
NC_003047:3360000:337792933779293378910982Sinorhizobium meliloti 1021, complete genome6e-0856.2
NC_008740:3520500:3531509353150935330501542Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region6e-0856.2
NC_008740:4109000:4109567410956741111081542Marinobacter aquaeolei VT8, complete genomeIntegrase, catalytic region6e-0856.2
NC_008095:4189082:4213467421346742150051539Myxococcus xanthus DK 1622, complete genometransposase, IS21 family6e-0856.2
NC_008095:2497842:2505965250596525075031539Myxococcus xanthus DK 1622, complete genometransposase, IS21 family6e-0856.2
NC_017249:8221992:8271347827134782727051359Bradyrhizobium japonicum USDA 6, complete genometransposase6e-0856.2
NC_017249:8427163:8448059844805984494171359Bradyrhizobium japonicum USDA 6, complete genometransposase6e-0856.2
NC_004463:1872537:1875114187511418766341521Bradyrhizobium japonicum USDA 110, complete genomeputative transposase7e-0855.8
NC_012587:2326000:232910923291092329927819Rhizobium sp. NGR234, complete genomeamino-terminus of transposase TRm23a-like protein7e-0855.8
NC_008750:1253354:1263607126360712651481542Shewanella sp. W3-18-1, complete genomeIntegrase, catalytic region1e-0755.5
NC_008738:1:1630116301178421542Marinobacter aquaeolei VT8 plasmid pMAQU01, complete sequenceIntegrase, catalytic region1e-0755.5
NC_007645:6461267:6474373647437364759141542Hahella chejuensis KCTC 2396, complete genometransposase, IS21 family9e-0855.5
NC_007645:5747721:5749500574950057510411542Hahella chejuensis KCTC 2396, complete genometransposase, IS21 family9e-0855.5
NC_007645:6350079:6367193636719363687341542Hahella chejuensis KCTC 2396, complete genometransposase, IS21 family9e-0855.5
NC_015850:2147682:2147682214768221492231542Acidithiobacillus caldus SM-1 chromosome, complete genomeintegrase catalytic subunit4e-0753.5
NC_012691:1743038:1773360177336017749011542Tolumonas auensis DSM 9187, complete genomeIntegrase catalytic region5e-0753.1
NC_007948:1972290:1997460199746019989981539Polaromonas sp. JS666, complete genomeIntegrase, catalytic region7e-0752.8
NC_009434:1580205:1585113158511315867711659Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase9e-0752.4
NC_009434:695582:7513237513237529811659Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase9e-0752.4
NC_009434:3611738:3668435366843536700931659Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase9e-0752.4
NC_015633:2801321:2816080281608028176121533Vibrio anguillarum 775 chromosome chromosome I, complete sequencetransposase8e-0752.4
NC_009784:1231791:1231791123179112333231533Vibrio harveyi ATCC BAA-1116 chromosome II, complete sequencehypothetical protein8e-0752.4
NC_002678:4885790:489044648904464891153708Mesorhizobium loti MAFF303099, complete genometransposase1e-0652.4
NC_016589:183432:199985199985200677693Burkholderia sp. YI23 chromosome 1, complete sequenceputative transposase for insertion sequence2e-0651.2
NC_012660:2045398:2061851206185120634311581Pseudomonas fluorescens SBW25 chromosome, complete genomeputative transposase subunit A2e-0650.8
NC_006177:2883476:2894345289434528958711527Symbiobacterium thermophilum IAM 14863, complete genometransposase subunit4e-0650.1
NC_006177:280234:3076823076823092081527Symbiobacterium thermophilum IAM 14863, complete genometransposase subunit4e-0650.1
NC_015740:2614317:2635592263559226371061515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit8e-0649.3
NC_015740:3631326:3654574365457436560881515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit8e-0649.3
NC_015740:4072415:4078101407810140796151515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit8e-0649.3
NC_015740:2407500:2438489243848924400031515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit8e-0649.3
NC_015740:3631326:3632727363272736342411515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit8e-0649.3
NC_015740:141910:1566021566021581161515Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeputative transposase subunit8e-0649.3
NC_009434:608765:6498756498756513891515Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase1e-0548.9
NC_009434:3611738:3683250368325036847641515Pseudomonas stutzeri A1501, complete genomeISPsy14, transposase1e-0548.9