Pre_GI: BLASTP Hits

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Query: NC_004741:3041294:3078306 Shigella flexneri 2a str. 2457T, complete genome

Start: 3078306, End: 3079199, Length: 894

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a highly virulent strain that has been widely used for genetic and clinical research. Causes enteric disease. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:3127175312717531303033129Shigella flexneri 2002017 chromosome, complete genomeOuter membrane fluffing protein3e-155547
NC_004337:3049118:3087470308747030905983129Shigella flexneri 2a str. 301, complete genomeouter membrane fluffing protein3e-155547
NC_004431:3409389:3491808349180834949363129Escherichia coli CFT073, complete genomeAntigen 43 precursor3e-154544
CP002797:4656327:4661666466166646644522787Escherichia coli NA114, complete genomePutative antigen 43 precursor3e-154544
NC_008253:334467:3525863525863557143129Escherichia coli 536, complete genomeputative autotransporter2e-143508
NC_004431:1211000:1225454122545412287293276Escherichia coli CFT073, complete genomeAntigen 43 precursor1e-116419
NC_007946:1119000:1133653113365311364992847Escherichia coli UTI89, complete genomeputative autotransporter2e-97355
NC_008253:3161311:3168808316880831716542847Escherichia coli 536, complete genomeputative autotransporter5e-97354
NC_013361:3313284:3325633332563333284792847Escherichia coli O26:H11 str. 11368 chromosome, complete genomeAidA-I adhesin8e-97353
NC_013716:5201097:5224334522433452271802847Citrobacter rodentium ICC168, complete genomeputative adhesin autotransporter2e-95349
NC_013592:3263005:3266698326669832699253228Dickeya dadantii Ech586, complete genomeouter membrane autotransporter barrel domain protein8e-69260
NC_013717:5726:69396939117204782Citrobacter rodentium ICC168 plasmid pCROD1, complete sequenceputative autotransporter adhesin5e-1788.6
NC_020418:603750:6244686244686269932526Morganella morganii subsp. morganii KT, complete genomePutative autotransporter3e-1169.3
NC_011741:2818750:2826442282644228276861245Escherichia coli IAI1 chromosome, complete genome5e-0962
CU928160:2818750:2826442282644228276861245Escherichia coli IAI1 chromosome, complete genomefragment of adhesin-like autotransporter (part 1)5e-0962
NC_013008:3525428:3559285355928535638714587Escherichia coli O157:H7 str. TW14359 chromosome, complete genomeadhesin5e-0962
NC_002655:3538656:3567614356761435722004587Escherichia coli O157:H7 EDL933, complete genomeputative ATP-binding component of a transport system5e-0962
NC_011751:3048490:3080198308019830849014704Escherichia coli UMN026 chromosome, complete genomeadhesin-like autotransporter7e-0961.6
NC_002695:3468873:3500324350032435050394716Escherichia coli O157:H7 str. Sakai, complete genomeputative ATP-binding component of a transport system6e-0961.6
NC_011353:3573641:3604560360456036092754716Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein6e-0961.6
NC_011750:2928990:2947201294720129488471647Escherichia coli IAI39 chromosome, complete genome8e-0961.2
NC_007384:2933625:2940374294037429418821509Shigella sonnei Ss046, complete genome1e-0860.5
NC_010498:2847359:2851680285168028563774698Escherichia coli SMS-3-5, complete genomehypothetical protein2e-0859.7
NC_010468:1130000:1141442114144211460224581Escherichia coli ATCC 8739, complete genomeouter membrane autotransporter barrel domain protein3e-0859.3
NC_012759:2633949:2661980266198026665604581Escherichia coli BW2952 chromosome, complete genomeadhesin-like autotransporter4e-0859.3
NC_000913:2746886:2776168277616827807484581Escherichia coli K12, complete genomeadhesin-like autotransporter4e-0859.3
AC_000091:2747520:2776802277680227813824581Escherichia coli W3110 DNA, complete genomeadhesin-like autotransporter4e-0859.3
NC_020063:2531643:2541491254149125440102520Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane autotransporter barrel domain-containing protein6e-0858.5
NC_008783:507939:5165335165335189802448Bartonella bacilliformis KC583, complete genomeputative adhesin/invasin4e-0755.8
NC_013941:1460144:1475857147585714791353279Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeATP-binding component of a transporter2e-0653.5
NC_020300:583874:5885645885645910982535Bartonella australis Aust/NH1, complete genomepertactin family virulence factor/autotransporter2e-0653.1
NC_017121:1663698:1685503168550316877432241Acetobacter pasteurianus IFO 3283-07, complete genomeouter membrane protein4e-0652.4
NC_017111:1663698:1685503168550316877432241Acetobacter pasteurianus IFO 3283-32, complete genomeouter membrane protein4e-0652.4
NC_017108:1663698:1685503168550316877432241Acetobacter pasteurianus IFO 3283-12, complete genomeouter membrane protein4e-0652.4
NC_013209:1663704:1685509168550916877492241Acetobacter pasteurianus IFO 3283-01, complete genomeouter membrane protein4e-0652.4