Pre_GI: BLASTP Hits

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Query: NC_004631:4494000:4496159 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 4496159, End: 4497463, Length: 1305

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016832:4482437:4484427448442744857311305Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Vi polysaccharide export inner-membrane protein vexD0856
NC_012125:4559990:4561980456198045632841305Salmonella enterica subsp. enterica serovar Paratyphi C strainVi polysaccharide export inner-membrane protein0856
NC_014532:1579419:1590073159007315911551083Halomonas elongata DSM 2581, complete genomehomolog to capsule polysaccharide export inner-membrane protein3e-22106
NC_006677:1596560:1624821162482116259211101Gluconobacter oxydans 621H, complete genomeCapsule polysaccharide export inner-membrane protein1e-20101
NC_011901:1398376:1400543140054314016251083Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completechain length determinant protein2e-20100
NC_007510:759905:7795607795607807021143Burkholderia sp. 383 chromosome 1, complete sequenceCapsule polysaccharide export protein-like2e-20100
NC_009707:1551412:1566279156627915673971119Campylobacter jejuni subsp. doylei 269.97 chromosome, completecapsular polysaccharide ABC transporter2e-20100
NC_008542:855347:8752858752858764331149Burkholderia cenocepacia HI2424 chromosome 1, complete sequencelipopolysaccharide biosynthesis6e-2099
NC_008060:306170:3273123273123284601149Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencelipopolysaccharide biosynthesis6e-2099
NC_015061:1481500:1481550148155014827131164Rahnella sp. Y9602 chromosome, complete genomecapsule polysaccharide export inner-membrane protein KpsE1e-1998.2
NC_017047:1434500:1434522143452214356701149Rahnella aquatilis HX2 chromosome, complete genomecapsule polysaccharide export inner-membrane protein KpsE1e-1998.2
NC_014618:4010689:4014955401495540161271173Enterobacter cloacae SCF1 chromosome, complete genomecapsule polysaccharide export inner-membrane protein4e-1996.3
NC_012586:922095:9423199423199436501332Rhizobium sp. NGR234 plasmid pNGR234b, complete sequenceRkpR, polysaccharide export protein4e-1996.3
NC_011000:3514338:3548951354895135500571107Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative capsule polysaccharide export protein ABC transporter membrane protein5e-1995.9
NC_016745:3199934:3203260320326032043421083Oceanimonas sp. GK1 chromosome, complete genomehypothetical protein6e-1995.9
NC_015579:53500:6594365943670521110Novosphingobium sp. PP1Y plasmid Lpl, complete sequencecapsular polysaccharide transport system permease protein2e-1894.4
NC_008751:2988235:3013591301359130149011311Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomecapsule polysaccharide export protein-like protein2e-1894.4
NC_015593:2841856:2869955286995528711301176Sphingobium chlorophenolicum L-1 chromosome chromosome 1, completecapsule polysaccharide export-like protein5e-1892.8
NC_017512:2161000:2174218217421821753811164Neisseria meningitidis WUE 2594, complete genomecapsule export inner-membrane protein CtrB1e-1791.3
NC_008787:1345988:1363246136324613643641119Campylobacter jejuni subsp. jejuni 81-176, complete genomecapsular polysaccharide ABC transporter4e-1789.4
NC_006350:3329477:3353701335370133548491149Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative capsule polysaccharide export ABC transporter transmembrane protein4e-1686.7
NC_007434:3588081:3612305361230536137021398Burkholderia pseudomallei 1710b chromosome I, complete sequenceWcbD4e-1686.7
NC_006348:2372945:2397169239716923983171149Burkholderia mallei ATCC 23344 chromosome 1, complete sequence4e-1686.7
NC_009080:2123987:2148211214821121497581548Burkholderia mallei NCTC 10247 chromosome II, complete sequencecapsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family3e-1686.7
NC_008836:1072721:1096945109694510984921548Burkholderia mallei NCTC 10229 chromosome II, complete sequencecapsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family3e-1686.7
NC_008785:516500:5250425250425265891548Burkholderia mallei SAVP1 chromosome II, complete sequencecapsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family3e-1686.7
NC_009076:3179662:3203886320388632054331548Burkholderia pseudomallei 1106a chromosome I, complete sequencecapsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family3e-1686.7
NC_009074:3163362:3187586318758631891331548Burkholderia pseudomallei 668 chromosome I, complete sequencecapsular polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family3e-1686.7
NC_017033:3013654:3036462303646230376101149Frateuria aurantia DSM 6220 chromosome, complete genomecapsule polysaccharide export protein4e-1686.3
NC_015424:1689500:1699731169973117009331203Aeromonas veronii B565 chromosome, complete genomecapsule transport protein KpsE7e-1685.5
NC_008639:2702662:2721566272156627227651200Chlorobium phaeobacteroides DSM 266, complete genomelipopolysaccharide biosynthesis2e-1584
NC_014311:2606434:2623408262340826245531146Ralstonia solanacearum PSI07 chromosome, complete genomecapsule export inner-membrane protein CtrB2e-1584
NC_010814:1551624:1596465159646515976221158Geobacter lovleyi SZ, complete genomelipopolysaccharide biosynthesis protein3e-1583.6
NC_013446:3147202:3167883316788331690131131Comamonas testosteroni CNB-2, complete genomecapsule polysaccharide exportinner-membrane protein3e-1583.2
NC_008253:3161311:3179135317913531802831149Escherichia coli 536, complete genomecapsule polysaccharide export inner-membrane protein KpsE5e-1582.8
NC_010804:671081:6817186817186828391122Burkholderia multivorans ATCC 17616 chromosome 1, completeABC-2 type transport system permease protein1e-1481.6
NC_010084:2822295:2841934284193428430551122Burkholderia multivorans ATCC 17616 chromosome 1, completelipopolysaccharide biosynthesis protein1e-1481.6
NC_010336:1248071:1257023125702312582821260Francisella philomiragia subsp. philomiragia ATCC 25017, completecapsular polysaccharide ABC transporter1e-1481.6
NC_012967:3012317:3013420301342030145561137Escherichia coli B str. REL606 chromosome, complete genomeCapsule polysaccharide export inner-membrane protein kpsE1e-1481.3
NC_004431:3513147:3513147351314735142951149Escherichia coli CFT073, complete genomeKpsE protein2e-1480.9
NC_010498:3291344:3291344329134432924921149Escherichia coli SMS-3-5, complete genomepolysialic acid capsule export inner-membrane protein KpsE2e-1480.9
NC_011751:3530954:3530954353095435321021149Escherichia coli UMN026 chromosome, complete genomeCapsule polysaccharide export inner-membrane protein2e-1480.9
NC_009512:4375452:4384613438461343857191107Pseudomonas putida F1, complete genomelipopolysaccharide biosynthesis protein2e-1480.5
NC_011745:3511600:3512691351269135138391149Escherichia coli ED1a chromosome, complete genomeCapsule polysaccharide export inner-membrane protein2e-1480.5
NC_014541:475350:4947814947814960161236Ferrimonas balearica DSM 9799 chromosome, complete genomelipopolysaccharide biosynthesis protein2e-1480.5
NC_007946:3289151:3290242329024232913901149Escherichia coli UTI89, complete genomepolysialic acid capsule synthesis protein KpsE3e-1480.1
NC_017515:76861:8201282012831751164Neisseria meningitidis M04-240196 chromosome, complete genomecapsule polysaccharide export inner-membrane protein CtrB4e-1479.7
NC_011750:3584000:3584271358427135854191149Escherichia coli IAI39 chromosome, complete genomecapsule polysaccharide export inner-membrane protein5e-1479.3
NC_015596:1511961:1517959151795915192901332Sinorhizobium meliloti AK83 chromosome 2, complete sequencecapsule polysaccharide export protein-like protein6e-1479
NC_011742:3277941:3277941327794132790891149Escherichia coli S88 chromosome, complete genomeCapsule polysaccharide export inner-membrane protein9e-1478.6
NC_008563:3362058:3363149336314933642971149Escherichia coli APEC O1, complete genomepolysialic acid transport protein KpsE precursor9e-1478.6
NC_015696:758153:7678257678257690841260Francisella sp. TX077308 chromosome, complete genomecapsular polysaccharide export system inner membrane protein KpsE3e-1377
NC_018000:3009864:3026619302661930279591341Sinorhizobium fredii USDA 257 chromosome, complete genomecapsule polysaccharide export inner-membrane protein KpsE8e-1375.5
NC_011989:594353:6140546140546153011248Agrobacterium vitis S4 chromosome 1, complete sequencecapsule polysaccharide export inner-membrane protein2e-1273.9
NC_015381:766355:7892167892167903701155Burkholderia gladioli BSR3 chromosome 1, complete sequenceWcbD protein2e-1273.9
NC_011989:594353:6120936120936133401248Agrobacterium vitis S4 chromosome 1, complete sequenceCapsule polysaccharide export protein3e-1273.2
NC_010508:809974:8315638315638327351173Burkholderia cenocepacia MC0-3 chromosome 1, complete sequenceWcbD4e-1272.8
NC_015976:1064888:1070830107083010721431314Sphingobium sp. SYK-6, complete genomeputative capsule polysaccharide export inner-membrane protein5e-1272.8
NC_009620:1504933:1510238151023815115691332Sinorhizobium medicae WSM419 plasmid pSMED01, complete sequencecapsule polysaccharide export protein-like protein5e-1272.8
NC_008686:1180388:1197226119722611989651740Paracoccus denitrificans PD1222 chromosome 1, complete sequencecapsule polysaccharide export protein-like6e-1272.4
NC_011666:3001513:3003164300316430043481185Methylocella silvestris BL2, complete genomelipopolysaccharide biosynthesis protein9e-1272
NC_013282:646569:6644126644126655871176Cronobacter turicensis, complete genomeCapsule polysaccharide export inner-membrane protein kpsE4e-1169.7
NC_011761:2641481:2645950264595026470651116Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completecapsule polysaccharide export inner-membrane protein4e-1169.7
NC_012039:257962:2603542603542614691116Campylobacter lari RM2100, complete genomecapsular polysaccharide export inner-membrane protein KpsE4e-1169.7
NC_010125:2483122:2499440249944025006151176Gluconacetobacter diazotrophicus PAl 5, complete genomeputative capsule polysaccharide export inner-membrane protein ctrB7e-1168.9
NC_014006:2999500:3004960300496030061501191Sphingobium japonicum UT26S chromosome 1, complete genomecapsular polysaccharide export protein2e-1067.4
NC_020260:3277007:3279199327919932803141116Cronobacter sakazakii Sp291, complete genomehypothetical protein4e-1066.6
NC_010170:2374852:2383914238391423850201107Bordetella petrii, complete genomeMPA2 family protein involved in capsular polysaccharide export1e-0964.7
NC_011365:738321:7529617529617541361176Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeputative capsule polysaccharide export inner-membrane protein CtrB2e-0860.5
NC_011894:2125474:2141381214138121426221242Methylobacterium nodulans ORS 2060, complete genomecapsule polysaccharide export protein-like protein1e-0758.2
NC_016027:2047954:2093698209369820948851188Gluconacetobacter xylinus NBRC 3288, complete genomelipopolysaccharide biosynthesis protein5e-0756.2
NC_007516:1847745:1858108185810818593161209Synechococcus sp. CC9605, complete genomepossible ABC transporter involved in polysaccharide efflux3e-0653.5
NC_005070:617448:6229926229926242361245Synechococcus sp. WH 8102, complete genomepossible ABC transporter involved in polysaccharide efflux6e-0652.4