Pre_GI: BLASTP Hits

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Query: NC_004603:1897532:1902973 Vibrio parahaemolyticus RIMD 2210633 chromosome I, complete

Start: 1902973, End: 1903377, Length: 405

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012997:2107933:212108421210842121506423Teredinibacter turnerae T7901, complete genomehypothetical protein1e-41167
NC_011094:1683979:170677917067791707228450Salmonella enterica subsp. enterica serovar Schwarzengrund strglutathione-dependent formaldehyde-activating, GFA8e-37152
NC_004631:1587000:160352716035271603976450Salmonella enterica subsp. enterica serovar Typhi Ty2, completehypothetical protein8e-37152
NC_011149:1429523:147066414706641471113450Salmonella enterica subsp. enterica serovar Agona str. SL483,glutathione-dependent formaldehyde-activating, GFA8e-37152
NC_011083:1761352:178414217841421784591450Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,glutathione-dependent formaldehyde-activating, GFA9e-37151
NC_016831:1468691:149147414914741491923450Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein9e-37151
NC_003197:1713259:173603917360391736488450Salmonella typhimurium LT2, complete genomeputative inner membrane protein2e-36150
NC_016810:1670112:169289216928921693341450Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-36150
NC_016856:1723236:174601617460161746465450Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein2e-36150
NC_016857:1670112:169289216928921693341450Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein2e-36150
NC_016860:1710950:173373017337301734179450Salmonella enterica subsp. enterica serovar Typhimurium strputative inner membrane protein2e-36150
NC_016863:1671428:169420816942081694657450Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein2e-36150
NC_006905:1726416:174919517491951749644450Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein2e-36150
NC_011080:1709612:173239217323921732841450Salmonella enterica subsp. enterica serovar Newport str. SL254,glutathione-dependent formaldehyde-activating, GFA2e-36150
NC_007005:98488:136494136494136931438Pseudomonas syringae pv. syringae B728a, complete genomeGlutathione-dependent formaldehyde-activating, GFA4e-36149
NC_016514:2476359:248248124824812482855375Enterobacter cloacae EcWSU1 chromosome, complete genomeglutathione-Dependent Formaldehyde-Activating GFA3e-34143
NC_017986:3407913:342706934270693427563495Pseudomonas putida ND6 chromosome, complete genomehypothetical protein3e-34143
NC_002947:737924:757377757377757832456Pseudomonas putida KT2440, complete genomehypothetical protein4e-34143
NC_010505:2103887:212904921290492129474426Methylobacterium radiotolerans JCM 2831, complete genomeglutathione-dependent formaldehyde-activating GFA3e-31133
NC_018691:318662:342659342659342913255Alcanivorax dieselolei B5 chromosome, complete genomeGlutathione-dependent formaldehyde-activating GFA1e-30131
NC_014121:1848971:186172818617281862030303Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein2e-25114
NC_016832:1582273:160047716004771600797321Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Glutathione-dependent formaldehyde-activating, GFA1e-23108
NC_017046:1669995:169277516927751693095321Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein3e-23107
NC_015733:715947:737249737249737551303Pseudomonas putida S16 chromosome, complete genomeglutathione-dependent formaldehyde-activating protein1e-21101
NC_004463:2158116:2200533220053322017561224Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein2e-1581.3
NC_008702:2892605:289668628966862897087402Azoarcus sp. BH72, complete genomeconserved hypothetical protein2e-1477.4
NC_017249:7993713:8076227807622780773781152Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein4e-1476.6
NC_007645:6647500:667228666722866672633348Hahella chejuensis KCTC 2396, complete genomehypothetical protein2e-1374.3
NC_009256:3056000:307414630741463074493348Burkholderia vietnamiensis G4 chromosome 1, complete sequenceglutathione-dependent formaldehyde-activating protein2e-1271.2
NC_008391:2045348:206532520653252065699375Burkholderia cepacia AMMD chromosome 2, complete sequenceglutathione-dependent formaldehyde-activating, GFA3e-1270.5
NC_017249:18493:358223582236217396Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein8e-1268.9
NC_016613:2139276:215197021519702152350381Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein2e-1168.2
NC_010804:2808676:282898128289812829328348Burkholderia multivorans ATCC 17616 chromosome 1, completeprobable glutathione-dependent formaldehyde-activating protein2e-0961.2
NC_009659:1984980:201973020197302020056327Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein2e-0961.2
NC_004463:18497:358273582736150324Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein2e-0857.8
NC_010410:480518:492979492979493329351Acinetobacter baumannii AYE, complete genomehypothetical protein2e-0857.4
NC_013440:1879306:189825518982551898680426Haliangium ochraceum DSM 14365, complete genomehypothetical protein3e-0857
NC_012691:779826:780984780984781409426Tolumonas auensis DSM 9187, complete genomeglutathione-dependent formaldehyde-activating GFA9e-0855.5