Pre_GI: BLASTP Hits

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Query: NC_004578:6138669:6160884 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 6160884, End: 6161759, Length: 876

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009439:101174:100296100296101177882Pseudomonas mendocina ymp, complete genomehypothetical protein4e-133474
NC_015740:110633:129227129227130108882Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completehypothetical protein2e-131468
NC_007645:4423507:444428844442884445169882Hahella chejuensis KCTC 2396, complete genomehypothetical protein2e-43176
NC_017192:2216914:223378822337882234642855Arcobacter sp. L, complete genomehypothetical protein9e-42170
NC_008313:691692:7089587089587102351278Ralstonia eutropha H16 chromosome 1, complete sequenceouter membrane protein2e-33142
NC_014733:1223359:1240286124028612416201335Methylovorus sp. MP688 chromosome, complete genomeompa/motb domain protein3e-31135
NC_008570:1986466:200714520071452007855711Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein2e-30133
NC_005126:349658:391509391509392279771Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-29129
NC_002947:4604582:460945446094544610386933Pseudomonas putida KT2440, complete genomehypothetical protein3e-29129
NC_013592:1424560:144682414468241447600777Dickeya dadantii Ech586, complete genometype IV / VI secretion system protein, DotU family1e-28127
CP002185:234719:250784250784251545762Escherichia coli W, complete genomeT6SS-associated protein1e-28127
NC_012913:1832500:184591218459121846769858Aggregatibacter aphrophilus NJ8700, complete genomeVasF1e-28127
NC_008391:271254:2861002861002873981299Burkholderia cepacia AMMD chromosome 2, complete sequenceOmpA/MotB domain protein9e-29127
NC_013421:1143500:116609911660991166875777Pectobacterium wasabiae WPP163, complete genometype IV / VI secretion system protein, DotU family2e-28126
NC_016822:246715:262786262786263547762Shigella sonnei 53G, complete genomeputative membrane protein Aec262e-28126
NC_004605:1092476:1098604109860410999051302Vibrio parahaemolyticus RIMD 2210633 chromosome II, completehypothetical protein3e-28125
NC_007511:1094050:1108818110881811101221305Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein2e-26119
NC_012856:1585989:159849215984921599475984Ralstonia pickettii 12D chromosome 1, complete genometype IV / VI secretion system protein, DotU family4e-26119
NC_004603:1519904:152121115212111522017807Vibrio parahaemolyticus RIMD 2210633 chromosome I, completehypothetical protein6e-26118
NC_012962:293976:311260311260312030771Photorhabdus asymbiotica, complete genomehypothetical protein9e-26117
NC_014228:4331327:434755743475574348324768Xenorhabdus nematophila ATCC 19061, complete genomeconserved hypothetical protein (probable component of SST VI cluster)2e-25115
NC_010805:1576735:1584211158421115855091299Burkholderia multivorans ATCC 17616 chromosome 2, completeOmpA/MotB domain protein3e-25115
NC_010086:871723:8897988897988910931296Burkholderia multivorans ATCC 17616 chromosome 2, completetype VI secretion system OmpA/MotB family protein3e-25115
NC_013892:274297:278546278546279313768Xenorhabdus bovienii SS-2004 chromosome, complete genomehypothetical protein5e-25115
NC_011988:1036618:1059839105983910613741536Agrobacterium vitis S4 chromosome 2, complete genomeOmpA-type porin2e-24113
NC_008314:1275617:1290293129029312916001308Ralstonia eutropha H16 chromosome 2, complete sequenceouter membrane protein, OmpA/MotB-family1e-22107
NC_013282:1256769:1279380127938012806541275Cronobacter turicensis, complete genomehypothetical protein1e-20100
NC_015968:4117835:414576341457634146551789Enterobacter asburiae LF7a chromosome, complete genomeDotU family type IV / VI secretion system protein8e-1994.4
NC_010717:3868000:387028538702853871073789Xanthomonas oryzae pv. oryzae PXO99A, complete genomehypothetical protein7e-1891.3
NC_014323:4619344:463808446380844638857774Herbaspirillum seropedicae SmR1 chromosome, complete genometype IV / VI secretion system transmembrane protein4e-1789
NC_010086:20876:345453454535486942Burkholderia multivorans ATCC 17616 chromosome 2, completeconserved hypothetical protein1e-1687.4
NC_010805:2432167:243981824398182440759942Burkholderia multivorans ATCC 17616 chromosome 2, completehypothetical protein1e-1687.4
NC_014355:1865003:188203218820321882730699Candidatus Nitrospira defluvii, complete genomehypothetical protein1e-1687
NC_015381:429940:446062446062446847786Burkholderia gladioli BSR3 chromosome 1, complete sequenceOmpA family protein2e-1686.7
NC_007511:2072838:208231820823182083244927Burkholderia sp. 383 chromosome 2, complete sequencehypothetical protein1e-1584
NC_006350:3710641:371639137163913717176786Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein2e-1583.2
NC_009074:3559211:356550135655013566286786Burkholderia pseudomallei 668 chromosome I, complete sequencehypothetical protein2e-1583.2
NC_009076:3564500:356693035669303567715786Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein2e-1583.2
NC_007434:3973145:397461139746113975273663Burkholderia pseudomallei 1710b chromosome I, complete sequencehypothetical protein4e-1582
NC_007510:409843:420931420931421713783Burkholderia sp. 383 chromosome 1, complete sequencehypothetical protein2e-1480.1
NC_007511:1094050:1114275111427511154891215Burkholderia sp. 383 chromosome 2, complete sequenceouter membrane protein, OmpA/MotB family2e-1479.7
NC_005773:106000:148075148075148788714Pseudomonas syringae pv. phaseolicola 1448A, complete genomehypothetical protein3e-1479.3
NC_008390:407315:421936421936422718783Burkholderia cepacia AMMD chromosome 1, complete sequencehypothetical protein4e-1478.6
NC_008391:271254:2915422915422927561215Burkholderia cepacia AMMD chromosome 2, complete sequenceOmpA/MotB domain protein3e-1375.9
NC_009802:114749:135621135621136385765Campylobacter concisus 13826, complete genomeaspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B (Asp/Glu-ADT subunit B)1e-1273.9
NC_014310:785220:802006802006802797792Ralstonia solanacearum PSI07 megaplasmid, complete sequencesecretion system protein7e-1271.2
NC_004917:241053:242444242444243232789Helicobacter hepaticus ATCC 51449, complete genomehypothetical protein1e-1067.4
NC_010086:871723:8952398952398964561218Burkholderia multivorans ATCC 17616 chromosome 2, completetype IV / VI secretion system protein, DotU family5e-1065.1
NC_010805:1576735:1578848157884815800651218Burkholderia multivorans ATCC 17616 chromosome 2, completeputative OmpA/MotB family outer membrane protein5e-1065.1
NC_005966:2653945:265532426553242656127804Acinetobacter sp. ADP1, complete genomehypothetical protein4e-0962
NC_015057:30743:300123001230746735Acidobacterium sp. MP5ACTX9 plasmid pACIX901, complete sequencetype IV / VI secretion system protein, DotU family8e-0651.2