Pre_GI: BLASTP Hits

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Query: NC_004578:5916711:5927129 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 5927129, End: 5928061, Length: 933

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:5916711:593108759310875932019933Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein1e-179629
NC_008570:2014151:2021749202174920243042556Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomehypothetical protein2e-55216
NC_004578:5916711:5924253592425359262772025Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein7e-55214
NC_004578:6138669:6149242614924261516202379Pseudomonas syringae pv. tomato str. DC3000, complete genomeEF hand domain protein6e-43174
NC_004547:2470978:247993924799392480340402Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein3e-33142
NC_010501:3575726:3589399358939935920682670Pseudomonas putida W619, complete genomehypothetical protein3e-29129
NC_020829:809457:8171568171568200322877Pseudomonas denitrificans ATCC 13867, complete genomehypothetical protein9e-25114
NC_016835:1:1642816428182511824Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,hypothetical protein6e-24111
NC_004578:5916711:5928798592879859299761179Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein7e-23108
NC_014623:3462500:346932934693293470318990Stigmatella aurantiaca DW4/3-1 chromosome, complete genomehypothetical protein2e-21103
NC_020064:2779864:278176227817622782346585Serratia marcescens FGI94, complete genomehypothetical protein2e-21103
NC_009778:2951207:295781429578142958752939Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein1e-1687.4
NC_013282:2026083:2044962204496220471902229Cronobacter turicensis, complete genomehypothetical protein5e-1685.5
NC_015062:130359:1366531366531401413489Rahnella sp. Y9602 plasmid pRAHAQ01, complete sequencehypothetical protein1e-1273.9
NC_017060:125480:1334831334831369713489Rahnella aquatilis HX2 plasmid PRA1, complete sequencehypothetical protein1e-1273.9
NC_013282:2026083:2036072203607220387352664Cronobacter turicensis, complete genomehypothetical protein7e-1271.6
NC_009439:101174:1085661085661117303165Pseudomonas mendocina ymp, complete genomeglycoside hydrolase family protein2e-1066.2
NC_016835:1:5143514377942652Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,putative chitinase3e-1066.2
NC_011000:1262324:1273104127310412759862883Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein5e-1065.5
NC_016835:1:1327313273157052433Rahnella aquatilis CIP 78.65 = ATCC 33071 plasmid pRahaq201,putative chitinase7e-1065.1
NC_013282:2026083:2031137203113720333382202Cronobacter turicensis, complete genomehypothetical protein3e-0962.8
NC_008390:2448379:2456231245623124592002970Burkholderia cepacia AMMD chromosome 1, complete sequenceEF hand domain protein1e-0860.8
NC_009256:2509806:2525295252529525279492655Burkholderia vietnamiensis G4 chromosome 1, complete sequencehypothetical protein2e-0860.1
NC_010067:2529750:2544273254427325473713099Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-0859.7
NC_012725:97681:1109671109671138102844Burkholderia glumae BGR1 plasmid bglu_4p, complete sequencehypothetical protein5e-0858.9
NC_015377:34445:5180251802545612760Burkholderia gladioli BSR3 plasmid bgla_2p, complete sequencehypothetical protein1e-0757.4
NC_010067:2529750:2539587253958725418032217Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein6e-0755.1
NC_010717:3868000:3873652387365238765462895Xanthomonas oryzae pv. oryzae PXO99A, complete genomeEF hand domain protein6e-0755.1
NC_013282:2026083:2040822204082220430742253Cronobacter turicensis, complete genomehypothetical protein1e-0654.3