Pre_GI: BLASTP Hits

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Query: NC_004578:20738:58344 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 58344, End: 59906, Length: 1563

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014910:465980:5007665007665024391674Alicycliphilus denitrificans BC chromosome, complete genomecmp/dcmp deaminase zinc-binding protein1e-112407
NC_016445:2593800:2600611260061126022001590Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, completedeoxycytidylate deaminase-related protein4e-79296
NC_016944:168530:1753411753411769301590Vibrio cholerae IEC224 chromosome I, complete sequencedeoxycytidylate deaminase-likeprotein4e-79296
NC_002505:168532:1753431753431769411599Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, completedeoxycytidylate deaminase-related protein3e-79296
NC_012667:703852:7236167236167252141599Vibrio cholerae MJ-1236 chromosome 2, complete genomedeoxycytidylate deaminase-related protein3e-79296
NC_012668:442601:4620454620454636431599Vibrio cholerae MJ-1236 chromosome 1, complete sequencedeoxycytidylate deaminase-related protein3e-79296
NC_007614:109000:1249241249241263931470Nitrosospira multiformis ATCC 25196 chromosome 1, completeCytidine/deoxycytidylate deaminase, zinc-binding region2e-60233
NC_016631:5478098:5491916549191654934541539Granulicella mallensis MP5ACTX8 chromosome, complete genomeCMP/dCMP deaminase zinc-binding protein2e-60233
NC_004547:138500:1488111488111503911581Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative deoxycytidylate deaminase1e-59231
NC_015572:1:4863448634501331500Methylomonas methanica MC09 chromosome, complete genomeCMP/dCMP deaminase zinc-binding protein3e-58226
NC_008825:564392:5718055718055733731569Methylibium petroleiphilum PM1, complete genomeputative cytidine deaminase6e-52205
NC_011757:276953:2894972894972912061710Methylobacterium chloromethanicum CM4, complete genomeCMP/dCMP deaminase zinc-binding1e-50201
NC_010172:2082000:2087401208740120888671467Methylobacterium extorquens PA1, complete genomeCMP/dCMP deaminase zinc-binding1e-49197
NC_011894:585637:6096256096256113371713Methylobacterium nodulans ORS 2060, complete genomeCMP/dCMP deaminase zinc-binding1e-47191
NC_011004:3582078:3587744358774435892581515Rhodopseudomonas palustris TIE-1, complete genomeCMP/dCMP deaminase zinc-binding6e-47189
NC_012780:430653:4370594370594389391881Eubacterium eligens ATCC 27750 plasmid unnamed, complete sequencedCMP deaminase4e-25116
NC_007963:814148:8218578218578236861830Chromohalobacter salexigens DSM 3043, complete genomeCMP/dCMP deaminase, zinc-binding4e-2099.8
NC_017186:2252438:228089522808952281389495Amycolatopsis mediterranei S699 chromosome, complete genomeCMP/dCMP deaminase zinc-binding protein5e-1893.2
NC_013861:728648:7343167343167358931578Legionella longbeachae NSW150, complete genomecytidine/deoxycytidylate deaminase7e-1685.9
NC_019903:3537545:354427835442783544748471Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,deoxycytidylate deaminase8e-0962.4