Pre_GI: BLASTP Hits

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Query: NC_004347:4211241:4219693 Shewanella oneidensis MR-1, complete genome

Start: 4219693, End: 4220796, Length: 1104

Host Lineage: Shewanella oneidensis; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain was isolated from Oneida lake in New York, USA. Potential bioremediation organism. This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This organism is a facultative anaerobe that is capable of using a wide variety of terminal electron acceptors during anaerobic respiration which may make it valuable for bioremediation. Since the bacteria can reduce chromium and uranium from the liquid phase to form insoluble compounds, they may be used to eliminate these two environmental pollutants from water.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009665:593359:6056306056306067331104Shewanella baltica OS185 chromosome, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase0700
NC_009052:4437649:4442693444269344437961104Shewanella baltica OS155, complete genomePhosphoribosylaminoimidazolesuccinocarboxamide synthase0693
NC_009831:3092126:3096246309624630973521107Shewanella sediminis HAW-EB3, complete genomePhosphoribosylaminoimidazolesuccinocarboxamide synthase2e-157555
NC_007677:1872459:188253718825371883511975Salinibacter ruber DSM 13855, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase6e-27121
NC_013501:1547508:156254415625441563530987Rhodothermus marinus DSM 4252, complete genomePhosphoribosylaminoimidazolesuccinocarboxamidesy nthase2e-26120
NC_015410:3502099:352518635251863526055870Pseudomonas mendocina NK-01 chromosome, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase2e-25117
NC_020054:4161049:416249741624974163447951Fibrella aestuarina BUZ 2 drat genomePhosphoribosylaminoimidazolesuccinocarboxamidesy nthase5e-25115
NC_013730:3208571:323369932336993234640942Spirosoma linguale DSM 74, complete genomePhosphoribosylaminoimidazolesuccinocarboxamide synthase1e-24114
NC_016077:702000:717473717473718384912Acidaminococcus intestini RyC-MR95 chromosome, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase4e-24112
NC_014774:605085:612934612934613926993Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completephosphoribosylaminoimidazole-succinocarboxamide synthase9e-24111
NC_009831:3092126:310374131037413104079339Shewanella sediminis HAW-EB3, complete genomehypothetical protein2e-23110
NC_008309:1553399:155672015567201557565846Haemophilus somnus 129PT, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase (SAICAR synthetase)4e-23108
NC_015737:2691246:270770627077062708587882Clostridium sp. SY8519, complete genomehypothetical protein5e-22105
NC_012850:3454270:347140834714083472352945Rhizobium leguminosarum bv. trifolii WSM1325, complete genomePhosphoribosylaminoimidazolesuccinocarboxamide synthase8e-21101
NC_010994:3666651:368433836843383685282945Rhizobium etli CIAT 652, complete genomephosphoribosylamidoimidazolesuccinocarboxamide synthase protein1e-20101
NC_015183:2483653:249913424991342500084951Agrobacterium sp. H13-3 chromosome, complete genomephosphoribosylaminoimidazole- succinocarboxamidesynthase2e-20100
NC_014314:576465:625492625492626406915Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completephosphoribosylaminoimidazole-succinocarboxamide synthase2e-20100
NC_008380:4078670:409633840963384097282945Rhizobium leguminosarum bv. viciae 3841, complete genomeputative phosphoribosylamidoimidazole-succinocarboxamide synthase1e-20100
NC_003062:2506959:251900825190082519958951Agrobacterium tumefaciens str. C58 chromosome circular, completephosphoribosylaminoimidazole-succinocarboxamide synthase4e-2099.4
NC_003304:2507000:251912125191212520071951Agrobacterium tumefaciens str. C58 chromosome circular, completephosphoribosylaminoimidazole-succinocarboxamide synthase4e-2099.4
NC_016627:4535000:454225845422584543142885Clostridium clariflavum DSM 19732 chromosome, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase4e-2099.4
NC_007759:964000:984989984989985873885Syntrophus aciditrophicus SB, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase6e-2099
NC_007761:3564449:358285235828523583796945Rhizobium etli CFN 42, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase protein6e-2098.6
NC_011985:194973:194973194973195962990Agrobacterium radiobacter K84 chromosome 1, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase1e-1997.8
NC_011898:426951:438189438189439085897Clostridium cellulolyticum H10, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase3e-1996.7
NC_011988:1036618:104187910418791042829951Agrobacterium vitis S4 chromosome 2, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase4e-1995.9
NC_019907:1060005:107178610717861072727942Liberibacter crescens BT-1 chromosome, complete genomePhosphoribosylaminoimidazole-succinocarboxamide synthase8e-1995.1
NC_012985:779279:784943784943785914972Candidatus Liberibacter asiaticus str. psy62, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase7e-1995.1
NC_010571:1459363:146526914652691466177909Opitutus terrae PB90-1, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase6e-1995.1
NC_020299:127480:141788141788142663876Candidatus Kinetoplastibacterium oncopeltii TCC290E, completephosphoribosylaminoimidazole-succinocarboxamide synthase5e-1892.4
NC_019815:761480:771944771944772822879Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneiphosphoribosylaminoimidazole-succinocarboxamide synthase5e-1892
NC_015222:1492500:149424914942491495139891Nitrosomonas sp. AL212 chromosome, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase9e-1891.3
NC_007626:2204767:220887622088762209853978Magnetospirillum magneticum AMB-1, complete genomePhosphoribosylaminoimidazolesuccinocarboxamide synthase1e-1790.9
NC_015690:8019859:802318680231868024079894Paenibacillus mucilaginosus KNP414 chromosome, complete genomephosphoribosylaminoimidazolesuccinocarboxamide synthase3e-1789.7
NC_014910:4316706:431670643167064317626921Alicycliphilus denitrificans BC chromosome, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase3e-1686.3
NC_008711:3701635:372163037216303722568939Arthrobacter aurescens TC1, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase8e-1581.6
NC_013422:2004478:202226020222602023180921Halothiobacillus neapolitanus c2, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase1e-1481.3
NC_002677:2642860:264503126450312645924894Mycobacterium leprae TN, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase3e-1479.7
NC_012803:1980955:200194920019492002896948Micrococcus luteus NCTC 2665, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase5e-1479
NC_017093:8518961:852736685273668528205840Actinoplanes missouriensis 431, complete genomeputative phosphoribosylaminoimidazole-succinocarboxamide synthetase5e-1375.5
NC_013729:2157785:217001221700122170854843Kribbella flavida DSM 17836, complete genomePhosphoribosylaminoimidazolesuccinocarboxamide synthase2e-1273.6
NC_014210:5270643:528106752810675281903837Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,phosphoribosylaminoimidazole-succinocarboxamide synthase3e-1272.8
NC_013174:2564979:258628725862872587249963Jonesia denitrificans DSM 20603, complete genomephosphoribosylaminoimidazole-succinocarboxamide synthase2e-1170.5