Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3806404 Shigella flexneri 2a str. 301, complete genome

Start: 3806404, End: 3806494, Length: 91

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016902:44744:63205632056329591Escherichia coli KO11FL chromosome, complete genometRNA-Sec5e-0959.7
NC_011149:3863913:38679133867913386800795Salmonella enterica subsp. enterica serovar Agona str. SL483,tRNA-Sec6e-0959.7
NC_010498:4072681:40813404081340408143495Escherichia coli SMS-3-5, complete genometRNA-Sec6e-0959.7
NC_016860:3964000:39714723971472397156695Salmonella enterica subsp. enterica serovar Typhimurium strtRNA-Sec6e-0959.7
NC_013716:4306695:43841984384198438428891Citrobacter rodentium ICC168, complete genometRNA-Sec5e-0959.7
NC_010468:49074:55461554615555191Escherichia coli ATCC 8739, complete genometRNA-Sec5e-0959.7
NC_003198:3881221:39004633900463390055391Salmonella enterica subsp. enterica serovar Typhi str. CT18,tRNA-Pro5e-0959.7
CP002516:44744:63205632056329591Escherichia coli KO11, complete genometRNA-Sec5e-0959.7
NC_011751:4293966:42968054296805429689591Escherichia coli UMN026 chromosome, complete genometRNA-Sec5e-0959.7
CP002185:4035502:40427784042778404286891Escherichia coli W, complete genometRNA-Sec5e-0959.7
NC_008253:3941938:39477893947789394787991Escherichia coli 536, complete genometRNA-Sec5e-0959.7
NC_004431:4270305:42743084274308427439891Escherichia coli CFT073, complete genometRNA-Sec5e-0959.7
NC_011601:4096427:41022784102278410236891Escherichia coli O127:H6 str. E2348/69 chromosome, complete genometRNA-OTHER5e-0959.7
NC_012125:3879917:38857293885729388581991Salmonella enterica subsp. enterica serovar Paratyphi C straintRNA-Sec5e-0959.7
NC_012967:3769499:37752643775264377535491Escherichia coli B str. REL606 chromosome, complete genometRNA-Sec5e-0959.7
NC_013361:4959323:49665794966579496666991Escherichia coli O26:H11 str. 11368 chromosome, complete genometRNA-Sec5e-0959.7
NC_014618:57707:79625796257971591Enterobacter cloacae SCF1 chromosome, complete genometRNA-Sec5e-0959.7
NC_016863:3905875:39098753909875390996591Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1tRNA-OTHER5e-0959.7
NC_015968:74124:86830868308692091Enterobacter asburiae LF7a chromosome, complete genometRNA-Sec4e-0857
NC_015663:1356982:13633331363333136342795Enterobacter aerogenes KCTC 2190 chromosome, complete genometRNA-Sec4e-0856.6
NC_014837:33014:50044500445013491Pantoea sp. At-9b chromosome, complete genometRNA-Sec9e-0855.5
NC_017160:4508000:45211994521199452128991Yersinia pestis D182038 chromosome, complete genometRNA-Sec6e-0752.8
NC_010465:62348:69449694496953991Yersinia pseudotuberculosis YPIII, complete genometRNA-Sec6e-0752.8
NC_008150:4634695:46432044643204464329491Yersinia pestis Antiqua, complete genometRNA-Sec6e-0752.8
NC_020064:79422:84931849318502191Serratia marcescens FGI94, complete genometRNA-Sec7e-0752.8
NC_008800:4488112:45041824504182450427291Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,tRNA-Sec2e-0650.8
NC_015567:69190:75534755347562491Serratia sp. AS9 chromosome, complete genometRNA-Sec5e-0650.1
NC_015566:69190:75534755347562491Serratia sp. AS12 chromosome, complete genometRNA-Sec5e-0650.1
NC_009832:110239:11620711620711629791Serratia proteamaculans 568, complete genometRNA-Sec5e-0650.1