Pre_GI: BLASTP Hits

Some Help

Query: NC_004337:3049118:3097114 Shigella flexneri 2a str. 301, complete genome

Start: 3097114, End: 3097491, Length: 378

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:313681931368193137196378Shigella flexneri 2002017 chromosome, complete genomehypothetical protein6e-70261
NC_004741:3041294:308794130879413088318378Shigella flexneri 2a str. 2457T, complete genomehypothetical protein6e-70261
NC_007946:1119000:114037611403761140750375Escherichia coli UTI89, complete genomeunknown protein encoded within prophage CP-933L8e-66248
NC_008253:3161311:317475831747583175135378Escherichia coli 536, complete genomehypothetical protein YeeV8e-65245
AP010958:3669500:367234936723493672726378Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein3e-64243
NC_013353:3669500:367234936723493672726378Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein3e-64243
NC_004431:4319152:434005943400594340436378Escherichia coli CFT073, complete genomeHypothetical protein yeeV6e-64242
NC_013716:5201097:522029052202905220667378Citrobacter rodentium ICC168, complete genomehypothetical protein2e-63240
NC_007946:4875997:489534448953444895721378Escherichia coli UTI89, complete genomehypothetical protein5e-63239
NC_008253:4817864:483584248358424836219378Escherichia coli 536, complete genomehypothetical protein5e-63239
NC_002655:4653160:465278946527894653163375Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933L5e-63239
NC_002695:4584177:458380645838064584180375Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-63239
NC_013941:4470932:447374844737484474122375Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein5e-63239
NC_011083:4547825:456511445651144565491378Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-63239
NC_008253:334467:358839358839359216378Escherichia coli 536, complete genomehypothetical protein YeeV3e-63239
NC_009801:4882684:488571448857144886088375Escherichia coli E24377A, complete genomehypothetical protein6e-63238
NC_011745:3405520:342506434250643425438375Escherichia coli ED1a chromosome, complete genometoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage1e-61234
NC_011745:5114500:511726251172625117636375Escherichia coli ED1a chromosome, complete genometoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage1e-61234
NC_013361:5580741:558212255821225582496375Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein1e-61234
NC_012967:3769499:379410637941063794471366Escherichia coli B str. REL606 chromosome, complete genomehypothetical protein3e-60229
NC_012947:44512:499664996650331366Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completehypothetical protein3e-60229
NC_011750:4390000:441324144132414413618378Escherichia coli IAI39 chromosome, complete genometoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage8e-56215
NC_015224:4386599:440497644049764405344369Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein1e-36151
NC_011415:308825:327629327629327994366Escherichia coli SE11 chromosome, complete genomehypothetical protein2e-35147
NC_000913:2746886:277547527754752775804330Escherichia coli K12, complete genomeCP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system8e-35145
AC_000091:2747520:277610927761092776438330Escherichia coli W3110 DNA, complete genometoxin of the YpjF-YfjZ toxin-antitoxin system8e-35145
NC_010473:2839902:286724028672402867569330Escherichia coli str. K-12 substr. DH10B, complete genomeCP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system8e-35145
NC_012759:2633949:266128726612872661616330Escherichia coli BW2952 chromosome, complete genomeCP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system8e-35145
NC_009832:1946401:194766419476641948032369Serratia proteamaculans 568, complete genomeprotein of unknown function DUF12197e-35145
NC_016612:443398:454889454889455212324Klebsiella oxytoca KCTC 1686 chromosome, complete genometoxin of the YpjF-YfjZ toxin-antitoxin system3e-33140
NC_020260:882307:893046893046893372327Cronobacter sakazakii Sp291, complete genomehypothetical protein7e-33139
NC_012917:3241196:326688332668833267203321Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein5e-33139
AP010958:5272863:528996552899655290336372Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein4e-33139
NC_013353:5272863:528996552899655290336372Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-33139
NC_014618:690056:724320724320724661342Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein1e-32138
NC_016902:4236680:423809342380934238434342Escherichia coli KO11FL chromosome, complete genomehypothetical protein6e-32135
CP002516:4236680:423809342380934238434342Escherichia coli KO11, complete genomeprotein of unknown function DUF12196e-32135
NC_016816:1137904:114860511486051148934330Pantoea ananatis LMG 5342, complete genomeCP4-57 prophage3e-31133
NC_020064:3609844:363530536353053635634330Serratia marcescens FGI94, complete genomeProtein of unknown function (DUF1219)5e-30129
NC_015663:1356982:137870813787081379028321Enterobacter aerogenes KCTC 2190 chromosome, complete genomeCP4-57 prophage; toxin of the YpjF-YfjZ toxin-antitoxin system2e-29127
NC_014618:4114004:411930441193044119600297Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein2e-29127
NC_015761:299386:323231323231323572342Salmonella bongori NCTC 12419, complete genomeprophage protein4e-29126
NC_013592:3263005:327709432770943277447354Dickeya dadantii Ech586, complete genomeprotein of unknown function DUF12194e-29126
NC_020063:4127161:413165941316594131979321Enterobacteriaceae bacterium strain FGI 57, complete genomeProtein of unknown function (DUF1219)5e-29125
NC_020260:603796:618890618890619219330Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-27121
NC_012912:1053618:108316310831631083477315Dickeya zeae Ech1591, complete genomeprotein of unknown function DUF12191e-27121
NC_012912:4167429:418008441800844180398315Dickeya zeae Ech1591, complete genomeprotein of unknown function DUF12192e-27120
NC_013971:3296272:330392033039203304240321Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein3e-27120
NC_013961:441719:467060467060467380321Erwinia amylovora, complete genomeUncharacterized protein ykfI3e-27120
NC_020181:5130513:513197551319755132304330Enterobacter aerogenes EA1509E, complete genomeYpjF toxin protein7e-27119
NC_009436:522649:542994542994543314321Enterobacter sp. 638, complete genomehypothetical protein9e-27118
NC_014121:3776902:379336237933623793619258Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative toxin module of toxin-antitoxin system3e-24110
NC_016902:44744:477294772948049321Escherichia coli KO11FL chromosome, complete genomehypothetical protein1e-23108
CP002516:44744:477294772948049321Escherichia coli KO11, complete genomeprotein of unknown function DUF12191e-23108
CP002185:4035502:405802440580244058344321Escherichia coli W, complete genomehypothetical protein1e-23108
NC_015663:549425:562064562064562345282Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-1890.1
NC_012962:3864000:3870561387056138724111851Photorhabdus asymbiotica, complete genomehypothetical protein1e-0858.5
NC_003198:4453457:4467675446767544696241950Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein8e-0855.8
NC_012125:4536383:4550636455063645525851950Salmonella enterica subsp. enterica serovar Paratyphi C strainhypothetical protein8e-0855.8
NC_016832:4425330:4439548443954844414971950Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein8e-0855.8
NC_009832:426993:444220444220444483264Serratia proteamaculans 568, complete genomehypothetical protein3e-0753.5
NC_015566:345084:372671372671372934264Serratia sp. AS12 chromosome, complete genomehypothetical protein5e-0753.1
NC_015567:346500:372857372857373120264Serratia sp. AS9 chromosome, complete genomehypothetical protein5e-0753.1
NC_009832:4482500:449768344976834497955273Serratia proteamaculans 568, complete genomehypothetical protein1e-0652
NC_010554:2789722:279840927984092798708300Proteus mirabilis HI4320, complete genomehypothetical protein4e-0650.1
NC_009832:4564752:457852645785264578792267Serratia proteamaculans 568, complete genomehypothetical protein6e-0649.3