Pre_GI: BLASTP Hits

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Query: NC_004337:3049118:3059316 Shigella flexneri 2a str. 301, complete genome

Start: 3059316, End: 3060077, Length: 762

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017328:3088907:309906630990663099866801Shigella flexneri 2002017 chromosome, complete genomehypothetical protein9e-147519
NC_004741:3041294:305149230514923052253762Shigella flexneri 2a str. 2457T, complete genomehypothetical protein2e-146518
NC_011748:4792703:480058548005854801385801Escherichia coli 55989, complete genome3e-146517
CU928145:4792703:480058548005854801385801Escherichia coli 55989 chromosome, complete genomefragment of conserved hypothetical protein, putative plasmid transfer protein (partial)3e-146517
NC_011745:3443371:3446437344643734476871251Escherichia coli ED1a chromosome, complete genomeputative plasmid transfer protein2e-143508
NC_016822:3420826:342900434290043429765762Shigella sonnei 53G, complete genomeputative plasmid transfer protein2e-143507
NC_007384:3383983:339417933941793394844666Shigella sonnei Ss046, complete genomehypothetical protein3e-124444
NC_010102:4557037:4574291457429145753941104Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein9e-94343
NC_014121:489500:5192025192025203981197Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completehypothetical protein4e-92337
NC_013421:701005:7394377394377406361200Pectobacterium wasabiae WPP163, complete genomeputative plasmid transfer protein6e-75280
NC_004547:611178:6190346190346202361203Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeputative plasmid transfer protein3e-74278
NC_016816:4129299:4132852413285241340601209Pantoea ananatis LMG 5342, complete genometype IV pilus protein, TraF1e-66253
NC_013971:335247:3380583380583392901233Erwinia amylovora ATCC 49946 chromosome, complete genomeplasmid transfer protein5e-65247
NC_013961:3413011:3432092343209234333241233Erwinia amylovora, complete genomehypothetical protein5e-65247
NC_013592:956829:9599709599709612171248Dickeya dadantii Ech586, complete genomeputative plasmid transfer protein1e-60233
NC_016945:666000:6841916841916853511161Vibrio cholerae IEC224 chromosome II, complete sequencehypothetical protein3e-29128
NC_013457:140474:1466111466111477321122Vibrio sp. Ex25 chromosome 2, complete genomeTraF-related protein1e-20100
NC_016628:193000:1993481993482005201173Vibrio furnissii NCTC 11218 chromosome 2, complete sequencehypothetical protein8e-2097.4
NC_009456:557962:5589135589135600791167Vibrio cholerae O395 chromosome 1, complete sequencehypothetical protein8e-2097.4
NC_012583:683887:7038637038637050291167Vibrio cholerae O395 chromosome chromosome II, complete sequencehypothetical protein8e-2097.4
NC_012667:839318:8596558596558608211167Vibrio cholerae MJ-1236 chromosome 2, complete genomeTraF-related protein8e-2097.4
NC_005140:883857:8997958997959009041110Vibrio vulnificus YJ016 chromosome II, complete sequencehypothetical protein8e-1787.4
NC_014966:919442:9301189301189311461029Vibrio vulnificus MO6-24/O chromosome II, complete sequencetraF-related protein3e-1685.5