Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5495167 Pseudomonas fluorescens Pf-5, complete genome

Start: 5495167, End: 5495979, Length: 813

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:4465247:447808344780834478901819Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein1e-77289
NC_011770:4763506:477965147796514780475825Pseudomonas aeruginosa LESB58, complete genomehypothetical protein8e-72270
NC_002516:1031386:105791610579161058740825Pseudomonas aeruginosa PAO1, complete genomehypothetical protein8e-72270
NC_008463:4566976:459279545927954593619825Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein2e-71268
NC_018080:4465618:448086544808654481506642Pseudomonas aeruginosa DK2 chromosome, complete genometol-pal system protein YbgF2e-68259
NC_003902:3544743:356206535620653562883819Xanthomonas campestris pv. campestris str. ATCC 33913, completehypothetical protein3e-21102
NC_015726:2817352:283248528324852833243759Cupriavidus necator N-1 chromosome 1, complete sequencehypothetical protein3e-2099
NC_002488:1775629:180259318025931803408816Xylella fastidiosa 9a5c, complete genomehypothetical protein8e-2097.4
NC_011083:862901:866064866064866852789Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tetratricopeptide TPR_2 repeat protein1e-1893.6
NC_003197:815964:817825817825818613789Salmonella typhimurium LT2, complete genomeputative periplasmic protein1e-1893.6
NC_010102:2287934:230551923055192306307789Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-1893.6
NC_011080:819103:822266822266823054789Salmonella enterica subsp. enterica serovar Newport str. SL254,tetratricopeptide TPR_2 repeat protein1e-1893.6
NC_011149:779903:781767781767782555789Salmonella enterica subsp. enterica serovar Agona str. SL483,tetratricopeptide TPR_2 repeat protein1e-1893.6
NC_011205:839425:842588842588843376789Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tol-pal system protein YbgF1e-1893.6
NC_011274:793681:795542795542796330789Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91tol-pal system protein YbgF1e-1893.6
NC_016831:2209834:222671722267172227505789Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-1893.6
NC_012125:793812:795685795685796473789Salmonella enterica subsp. enterica serovar Paratyphi C straintol-pal system protein YbgF2e-1893.2
NC_012856:737170:761866761866762651786Ralstonia pickettii 12D chromosome 1, complete genometol-pal system protein YbgF9e-1890.9
NC_010682:701912:724015724015724800786Ralstonia pickettii 12J chromosome 1, complete sequencetol-pal system protein YbgF8e-1890.9
NC_010694:2565580:259147725914772592289813Erwinia tasmaniensis, complete genomehypothetical protein3e-1789.4
NC_007973:2888824:290719829071982907956759Ralstonia metallidurans CH34 chromosome 1, complete sequenceTPR repeat3e-1789
NC_018012:1935500:195009019500901950956867Thiocystis violascens DSM 198 chromosome, complete genomeBeta-barrel assembly machine subunit BamD1e-1583.6
NC_012214:2673058:269751526975152698312798Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein4e-1582
NC_012791:2832001:283734128373412838090750Variovorax paradoxus S110 chromosome 1, complete genometol-pal system protein YbgF2e-1376.3
NC_014931:2929695:293146529314652932214750Variovorax paradoxus EPS chromosome, complete genometol-pal system protein YbgF9e-1374.3
NC_014844:2056943:206338820633882064278891Desulfovibrio aespoeensis Aspo-2 chromosome, complete genometol-pal system protein YbgF1e-1273.6
NC_008060:341851:352695352695353444750Burkholderia cenocepacia AU 1054 chromosome 1, complete sequencehypothetical protein3e-1272.8
NC_011000:3493575:350084835008483501597750Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein3e-1272.4
NC_014394:2765261:278223427822342782974741Gallionella capsiferriformans ES-2 chromosome, complete genometol-pal system protein YbgF8e-1167.8
NC_014910:1708045:170995317099531710741789Alicycliphilus denitrificans BC chromosome, complete genometol-pal system protein ybgf3e-1065.9
NC_015138:2025000:203092920309292031735807Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completetol-pal system protein YbgF6e-1064.7
NC_015563:3786192:380971438097143810496783Delftia sp. Cs1-4 chromosome, complete genometol-pal system protein YbgF1e-0963.9
NC_009883:1262000:126518812651881265940753Rickettsia bellii OSU 85-389, complete genomehypothetical protein1e-0860.5
NC_007940:266000:269483269483270235753Rickettsia bellii RML369-C, complete genomehypothetical protein1e-0860.5
NC_015682:379373:401480401480402385906Thermodesulfobacterium sp. OPB45 chromosome, complete genomehypothetical protein3e-0859.3
NC_020126:7255111:727943072794307280278849Myxococcus stipitatus DSM 14675, complete genometol-pal system protein YbgF8e-0651.2