Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5494353 Pseudomonas fluorescens Pf-5, complete genome

Start: 5494353, End: 5495000, Length: 648

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:4465247:447726444772644477911648Pseudomonas syringae pv. tomato str. DC3000, complete genomeradical SAM domain protein2e-109394
NC_018080:4465618:447999844799984480645648Pseudomonas aeruginosa DK2 chromosome, complete genomeradical activating enzyme3e-103374
NC_008463:4566976:459192845919284592722795Pseudomonas aeruginosa UCBPP-PA14, complete genomeprobable radical activating enzyme3e-103374
NC_011770:4763506:477878447787844779578795Pseudomonas aeruginosa LESB58, complete genomeputative radical activating enzyme4e-103374
NC_002516:1031386:105881210588121059606795Pseudomonas aeruginosa PAO1, complete genomeprobable radical activating enzyme4e-103373
NC_014394:2765261:278156927815692782228660Gallionella capsiferriformans ES-2 chromosome, complete genomeRadical SAM domain-containing protein8e-78289
NC_003902:3544743:356133735613373562020684Xanthomonas campestris pv. campestris str. ATCC 33913, completeradical activating enzyme1e-77289
NC_002488:1775629:180189218018921802575684Xylella fastidiosa 9a5c, complete genomehypothetical protein5e-76283
NC_014733:2363838:239044223904422391080639Methylovorus sp. MP688 chromosome, complete genomeradical sam domain protein2e-66251
NC_009012:3653111:366313136631313663763633Clostridium thermocellum ATCC 27405, complete genomeRadical SAM3e-45181
NC_016627:3815690:383083038308303831459630Clostridium clariflavum DSM 19732 chromosome, complete genomeorganic radical activating enzyme2e-39161
NC_012438:159927:166282166282166935654Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeorganic radical activating enzyme7e-21100
NC_010730:578493:584397584397585059663Sulfurihydrogenibium sp. YO3AOP1, complete genomeRadical SAM domain protein3e-2098.2
NC_012440:1215838:124151512415151242159645Persephonella marina EX-H1, complete genomeradical SAM domain protein6e-1994
NC_012589:1482075:149980914998091500435627Sulfolobus islandicus L.S.2.15, complete genomeRadical SAM domain protein2e-1892.4
NC_012588:1394103:141183714118371412463627Sulfolobus islandicus M.14.25 chromosome, complete genomeradical SAM protein2e-1892.4
NC_012622:1371448:138918213891821389808627Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeradical SAM protein2e-1892.4
NC_012623:1167289:116828411682841168910627Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeradical SAM protein2e-1892.4
NC_012632:1518520:153625415362541536880627Sulfolobus islandicus M.16.27 chromosome, complete genomeradical SAM protein2e-1892.4
NC_012726:1382095:139982913998291400455627Sulfolobus islandicus M.16.4 chromosome, complete genomeradical SAM protein2e-1892.4
NC_013769:1478546:149628014962801496906627Sulfolobus islandicus L.D.8.5 chromosome, complete genomeradical SAM protein2e-1892.4
NC_017275:1436875:145461014546101455236627Sulfolobus islandicus HVE10/4 chromosome, complete genomeradical SAM protein2e-1892.4
NC_017276:1285824:130355913035591304185627Sulfolobus islandicus REY15A chromosome, complete genomeorganic radical activating enzyme, NrdG2e-1892.4
NC_002754:537792:540769540769541404636Sulfolobus solfataricus P2, complete genomehypothetical protein2e-1892
NC_003106:1484768:148574214857421486380639Sulfolobus tokodaii str. 7, complete genomehypothetical protein4e-1891.3
NC_010644:691374:691374691374691961588Elusimicrobium minutum Pei191, complete genomeradical SAM domain-containing protein4e-1787.8
NC_006512:952894:965040965040965741702Idiomarina loihiensis L2TR, complete genomeOrganic radical activating enzyme1e-1583.2
NC_009440:1908864:190943119094311910063633Metallosphaera sedula DSM 5348 chromosome, complete genomeradical SAM protein1e-1583.2
NC_017516:1755500:175582917558291756467639Neisseria meningitidis H44/76 chromosome, complete genomeradical SAM domain-containing protein2e-1582.4
NC_008027:2621443:264128526412852641974690Pseudomonas entomophila L48, complete genomehypothetical protein4e-1581.6
NC_017515:1744500:174478717447871745425639Neisseria meningitidis M04-240196 chromosome, complete genomeradical SAM domain-containing protein1e-1479.7
NC_009256:3540531:354421035442103544842633Burkholderia vietnamiensis G4 chromosome 1, complete sequenceorganic radical activating enzyme-like protein1e-1479.7
NC_009615:1469642:150960615096061510151546Parabacteroides distasonis ATCC 8503 chromosome, complete genomehypothetical protein2e-1479.3
NC_007181:1364522:136623613662361366871636Sulfolobus acidocaldarius DSM 639, complete genomehypothetical protein5e-1477.8
NC_016111:639819:673680673680674387708Streptomyces cattleya NRRL 8057, complete genomeradical SAM protein7e-1477.4
NC_015224:889536:896196896196896867672Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein1e-1376.6
NC_015518:1638262:163957216395721640189618Acidianus hospitalis W1 chromosome, complete genomeorganic radical activating enzyme, NrdG4e-1374.7
NC_014008:2176633:218067321806732181353681Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeRadical SAM domain protein5e-1374.3
NC_009053:1257302:127003912700391270671633Actinobacillus pleuropneumoniae L20, complete genomehypothetical protein1e-1273.2
NC_011126:555483:590869590869591507639Hydrogenobaculum sp. Y04AAS1, complete genomeRadical SAM domain protein5e-1270.9
NC_015151:1872280:189484318948431895499657Vulcanisaeta moutnovskia 768-28 chromosome, complete genomeradical SAM protein8e-1270.5
NC_008820:2595500:261795826179582618638681Prochlorococcus marinus str. MIT 9303, complete genomepossible organic radical activating enzyme2e-1169.3
NC_015703:234960:250733250733251335603Runella slithyformis DSM 19594 chromosome, complete genomeRadical SAM domain-containing protein5e-1167.8
NC_008699:1132790:115779211577921158532741Nocardioides sp. JS614, complete genomeRadical SAM domain protein2e-1066.2
NC_018419:226000:244131244131244802672Secondary endosymbiont of Ctenarytaina eucalypti chromosome,organic radical activating enzyme1e-1066.2
NC_019973:5650646:566970256697025670436735Mesorhizobium australicum WSM2073, complete genome7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE2e-1065.9
NC_015675:6276357:629541362954136296147735Mesorhizobium opportunistum WSM2075 chromosome, complete genome7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE2e-1065.9
NC_014923:5721686:574074257407425741476735Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE2e-1065.9
NC_009091:1598044:160873816087381609409672Prochlorococcus marinus str. MIT 9301, complete genomepossible organic radical activating enzyme3e-1065.5
NC_015496:2155816:217130321713032171944642Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genomeRadical SAM domain protein5e-1064.3
NC_007984:221030:234917234917235588672Baumannia cicadellinicola str. Hc (Homalodisca coagulata), completehypothetical protein8e-1063.9
NC_019907:773944:779028779028779660633Liberibacter crescens BT-1 chromosome, complete genomequeuosine biosynthesis radical SAM protein QueE2e-0962.8
NC_014041:4093190:410060741006074101278672Zunongwangia profunda SM-A87 chromosome, complete genomeradical SAM superfamily protein2e-0962.4
NC_015574:2221220:223267722326772233378702Methanobacterium sp. SWAN-1 chromosome, complete genomeRadical SAM domain-containing protein3e-0962
NC_019673:2155669:217328421732842173919636Saccharothrix espanaensis DSM 44229 complete genomeGntS family protein5e-0961.2
NC_000909:1615927:162768016276801628411732Methanocaldococcus jannaschii DSM 2661, complete genomecoenzyme PQQ synthesis protein III7e-0960.8
NC_017187:1923733:194278119427811943545765Arcobacter butzleri ED-1, complete genomeradical SAM domain-containing protein1e-0860.1
NC_020410:1301500:130532513053251306056732Bacillus amyloliquefaciens subsp. plantarum UCMB5036 complete7-carboxy-7-deazaguanine synthase1e-0859.7
NC_015320:273979:281574281574282272699Archaeoglobus veneficus SNP6 chromosome, complete genomeanaerobic ribonucleoside-triphosphate reductase activating protein3e-0858.5
NC_013162:811763:811763811763812395633Capnocytophaga ochracea DSM 7271, complete genomeRadical SAM domain protein6e-0857.8
NC_014541:3642241:367457736745773675251675Ferrimonas balearica DSM 9799 chromosome, complete genomehypothetical protein7e-0857.4
NC_013729:863743:896491896491897126636Kribbella flavida DSM 17836, complete genomehypothetical protein8e-0857.4
NC_017082:532000:558486558486559136651Bradyrhizobium sp. S23321, complete genomehypothetical protein8e-0857
NC_002939:1866651:188452518845251885277753Geobacter sulfurreducens PCA, complete genomeradical SAM domain protein1e-0756.6
NC_017195:1411936:141804614180461418777732Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeYkvL1e-0756.2
NC_012559:1064821:109135310913531091982630Laribacter hongkongensis HLHK9, complete genomeOrganic radical activating enzyme2e-0755.8
NC_006526:1303635:130686313068631307516654Zymomonas mobilis subsp. mobilis ZM4, complete genomeorganic radical activating enzyme2e-0755.8
NC_018145:50237:639806398064633654Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completehypothetical protein2e-0755.8
NC_008278:2972323:298642829864282987093666Frankia alni ACN14a, complete genomeMycobacteriophage protein Gp51e-0653.5
NC_015275:1223088:124302112430211243746726Clostridium lentocellum DSM 5427 chromosome, complete genomepyruvate formate-lyase activating enzyme2e-0652.4
NC_011979:3070110:309103330910333091782750Geobacter sp. FRC-32, complete genomeRadical SAM domain protein8e-0650.4