Pre_GI: BLASTP Hits

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Query: NC_004129:4993974:4998688 Pseudomonas fluorescens Pf-5, complete genome

Start: 4998688, End: 4999341, Length: 654

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012660:1804610:183445618344561835124669Pseudomonas fluorescens SBW25 chromosome, complete genomeputative GntR family regulatory protein4e-76283
NC_015458:2441435:246138524613852462053669Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator2e-37155
NC_009668:46010:612776127761927651Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceGntR family transcriptional regulator2e-35148
NC_006350:1938631:197258619725861973254669Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative GntR-family transcriptional regulator5e-21100
NC_004578:6089958:610844861084486109113666Pseudomonas syringae pv. tomato str. DC3000, complete genometranscriptional regulator, GntR family9e-21100
NC_020209:3874844:390377339037733904372600Pseudomonas poae RE*1-1-14, complete genomeGntR family transcriptional regulator4e-1994.7
NC_016147:2964178:297771029777102978438729Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator3e-1478.6
NC_016803:3502749:351406835140683514757690Desulfovibrio desulfuricans ND132 chromosome, complete genomeGntR family transcriptional regulator3e-1271.6
NC_008268:3418000:341942634194263420220795Rhodococcus sp. RHA1, complete genomepossible transcriptional regulator, GntR family1e-1170.1
NC_015977:2565922:256592225659222566599678Roseburia hominis A2-183 chromosome, complete genomeGntR domain containing protein3e-0962
NC_016642:2440070:247139724713972472071675Pseudovibrio sp. FO-BEG1 chromosome, complete genomeGntR family transcriptional regulator4e-0961.6
NC_008391:1210451:123699212369921237723732Burkholderia cepacia AMMD chromosome 2, complete sequencetranscriptional regulator, GntR family2e-0859.3
NC_012108:3824977:383239938323993833073675Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (GntR family protein)2e-0858.9
NC_015145:3236445:327110632711063271798693Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeGntR family transcriptional regulator2e-0858.9
NC_013939:1625491:163812216381221638790669Deferribacter desulfuricans SSM1, complete genomeGntR family transcriptional regulator3e-0858.5
NC_015976:2064387:208343820834382084115678Sphingobium sp. SYK-6, complete genomeputative GntR family transcriptional regulator5e-0857.8
NC_020829:809457:813097813097813771675Pseudomonas denitrificans ATCC 13867, complete genometranscriptional regulator7e-0857.4
NC_016894:3329562:333153633315363332213678Acetobacterium woodii DSM 1030 chromosome, complete genomeGntR family transcriptional regulator8e-0857.4
NC_021150:2315362:231536223153622316084723Azotobacter vinelandii CA6, complete genometranscriptional regulator, GntR8e-0857.4
NC_012560:2315350:231535023153502316072723Azotobacter vinelandii DJ, complete genometranscriptional regulator, GntR8e-0857.4
NC_012108:5273289:528731952873195287996678Desulfobacterium autotrophicum HRM2, complete genomeputative transcriptional regulator9e-0857
NC_008596:4104476:411410641141064114864759Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein1e-0756.6
NC_015957:5082172:509492150949215095619699Streptomyces violaceusniger Tu 4113 chromosome, complete genomeGntR family transcriptional regulator1e-0756.6
NC_007974:785216:801188801188802060873Ralstonia metallidurans CH34 chromosome 2, complete sequencetranscriptional regulator, GntR family3e-0755.5
NC_014206:2971304:298470229847022985352651Geobacillus sp. C56-T3 chromosome, complete genomeGntR family transcriptional regulator4e-0754.7
NC_013526:439813:465389465389466147759Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family5e-0754.7
NC_014098:1258559:126150612615061262153648Bacillus tusciae DSM 2912 chromosome, complete genometranscriptional regulator, GntR family6e-0754.3
NC_013037:6344532:634809263480926348730639Dyadobacter fermentans DSM 18053, complete genometranscriptional regulator, GntR family9e-0753.9
NC_014011:472650:487302487302487922621Aminobacterium colombiense DSM 12261 chromosome, complete genometranscriptional regulator, GntR family8e-0753.9
NC_008314:1955793:195959419595941960286693Ralstonia eutropha H16 chromosome 2, complete sequencetranscriptional regulator9e-0753.5
NC_009922:315870:338735338735339421687Alkaliphilus oremlandii OhILAs, complete genometranscriptional regulator, GntR family1e-0653.1
NC_017986:4374979:438945543894554390258804Pseudomonas putida ND6 chromosome, complete genomeGntR family transcriptional regulator1e-0653.1
NC_009512:1691930:170640617064061707209804Pseudomonas putida F1, complete genometranscriptional regulator, GntR family1e-0653.1
NC_010002:3357752:335915233591523359841690Delftia acidovorans SPH-1, complete genometranscriptional regulator, GntR family2e-0652.8
NC_002947:4931476:493700649370064937698693Pseudomonas putida KT2440, complete genometranscriptional regulator, GntR family2e-0652.4
NC_013526:65495:890168901689705690Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genometranscriptional regulator, GntR family2e-0652.4
NC_016147:1825827:183168018316801832387708Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeGntR family transcriptional regulator2e-0652.4
NC_010501:4080937:408689040868904087633744Pseudomonas putida W619, complete genometranscriptional regulator, GntR family2e-0652.4
NC_002678:5060670:510937251093725110070699Mesorhizobium loti MAFF303099, complete genometranscription regulator2e-0652.4
NC_015458:3390674:340150434015043402238735Pusillimonas sp. T7-7 chromosome, complete genomeGntR family transcriptional regulator2e-0652.4
NC_008596:4104476:412930241293024129928627Mycobacterium smegmatis str. MC2 155, complete genometranscriptional regulator, GntR family protein2e-0652.4
NC_016906:4123000:412848441284844129173690Gordonia polyisoprenivorans VH2 chromosome, complete genomeputative GntR family transcriptional regulator3e-0652
NC_018691:761560:778164778164778892729Alcanivorax dieselolei B5 chromosome, complete genomeGntR-family transcriptional regulator3e-0652
NC_009439:3770282:380040438004043801204801Pseudomonas mendocina ymp, complete genomeGntR family transcriptional regulator4e-0651.6
NC_008543:323773:326602326602327249648Burkholderia cenocepacia HI2424 chromosome 2, complete sequencetranscriptional regulator, GntR family4e-0651.6
NC_018691:2810949:281205628120562812796741Alcanivorax dieselolei B5 chromosome, complete genomeGntR family transcriptional regulator4e-0651.6
NC_010175:3712456:372623837262383726933696Chloroflexus aurantiacus J-10-fl, complete genomeGntR domain protein5e-0651.2
NC_013947:1696671:171062117106211711286666Stackebrandtia nassauensis DSM 44728 chromosome, complete genometranscriptional regulator, GntR family5e-0651.2
NC_003047:3360000:337337633733763374068693Sinorhizobium meliloti 1021, complete genomePUTATIVE TRANSCRIPTION REGULATOR PROTEIN7e-0650.8
NC_014974:1076565:108378810837881084447660Thermus scotoductus SA-01 chromosome, complete genomeGntR family transcriptional regulator7e-0650.8
NC_013729:4835452:485750648575064858159654Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family6e-0650.8
NC_020291:4033000:404904640490464049720675Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, GntR family6e-0650.8
NC_010511:7553703:755681175568117557539729Methylobacterium sp. 4-46 chromosome, complete genomeGntR family transcriptional regulator6e-0650.8
NC_014837:1144500:116444811644481165134687Pantoea sp. At-9b chromosome, complete genomeGntR family transcriptional regulator9e-0650.4