Pre_GI: BLASTP Hits

Some Help

Query: NC_003366:2556457:2557451 Clostridium perfringens str. 13, complete genome

Start: 2557451, End: 2558023, Length: 573

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008262:2433979:243497324349732435545573Clostridium perfringens SM101, complete genomepredicted Transcriptional regulator6e-93339
NC_008261:2770468:277146227714622772034573Clostridium perfringens ATCC 13124, complete genomehypothetical protein2e-92337
NC_014328:2326930:232857723285772329158582Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative SirA-like protein3e-53207
NC_018664:3009166:301034530103453010944600Clostridium acidurici 9a chromosome, complete genomeselenium metabolism protein, SirA-like protein4e-42171
NC_003869:1812642:182649918264991827080582Thermoanaerobacter tengcongensis MB4, complete genomepredicted Transcriptional regulator3e-39161
NC_021182:401129:420691420691421326636Clostridium pasteurianum BC1, complete genomeselenium metabolism protein YedF2e-38158
NC_007498:357484:383118383118383717600Pelobacter carbinolicus DSM 2380, complete genomepredicted redox protein, regulator of disulfide bond formation1e-35149
NC_013171:416279:416536416536417135600Anaerococcus prevotii DSM 20548, complete genomeSirA family protein1e-32139
NC_015519:426948:464491464491465111621Tepidanaerobacter sp. Re1 chromosome, complete genomeselenium metabolism protein YedF1e-32139
NC_016584:4363382:436994943699494370542594Desulfosporosinus orientis DSM 765 chromosome, complete genomeselenium metabolism protein YedF3e-32138
NC_016629:3308329:332612233261223326754633Desulfovibrio africanus str. Walvis Bay chromosome, completeselenium metabolism protein YedF2e-28125
NC_015571:168617:169648169648170262615Porphyromonas gingivalis TDC60, complete genomehypothetical protein3e-26118
NC_010729:2038118:203914920391492039763615Porphyromonas gingivalis ATCC 33277, complete genomehypothetical protein3e-26118
NC_002950:1981155:198573619857361986350615Porphyromonas gingivalis W83, complete genomehypothetical protein1e-25116
NC_016803:465453:487444487444488070627Desulfovibrio desulfuricans ND132 chromosome, complete genomeselenium metabolism protein YedF2e-23108
NC_010674:426256:449536449536450114579Clostridium botulinum B str. Eklund 17B, complete genomehypothetical protein2e-22105
NC_010723:420025:444491444491445069579Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein2e-21102
NC_020409:437781:467615467615468229615Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completehypothetical protein2e-2099
NC_014960:2111397:211808221180822118423342Anaerolinea thermophila UNI-1, complete genomehypothetical protein3e-1581.6
NC_016023:1143130:114835611483561148694339Bacillus coagulans 36D1 chromosome, complete genomeselenium metabolism protein YedF4e-1374.3
NC_013949:939695:959521959521959865345Helicobacter mustelae 12198 chromosome, complete genomehypothetical protein3e-0651.6