Pre_GI: BLASTP Hits

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Query: NC_003366:2286083:2290351 Clostridium perfringens str. 13, complete genome

Start: 2290351, End: 2291361, Length: 1011

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is a type A isolate from the soil. It can establish gas gangrene in a murine experimental model. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:2481500:2504207250420725052171011Clostridium perfringens ATCC 13124, complete genomehypothetical protein8e-166583
NC_008262:2169262:2173511217351121745211011Clostridium perfringens SM101, complete genomehypothetical protein1e-163575
NC_010516:583870:5995355995356005391005Clostridium botulinum B1 str. Okra, complete genomehypothetical protein2e-81303
NC_017297:564727:5830295830295840331005Clostridium botulinum F str. 230613 chromosome, complete genomehypothetical protein2e-81302
NC_009699:564455:5827585827585837621005Clostridium botulinum F str. Langeland chromosome, complete genomehypothetical protein2e-81302
NC_014410:2511753:251279125127912513744954Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,hypothetical protein5e-77288
NC_015499:1062359:1068573106857310696251053Thermodesulfobium narugense DSM 14796 chromosome, complete genomehypothetical protein1e-74280
NC_014328:938393:9496649496649506801017Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative exopolysaccharide biosynthesis protein5e-65248
NC_015873:238187:239948239948240892945Megasphaera elsdenii DSM 20460, complete genomehypothetical protein7e-62238
NC_019903:3048132:3065342306534230664361095Desulfitobacterium dichloroeliminans LMG P-21439 chromosome,exopolysaccharide biosynthesis protein1e-57223
NC_010723:915697:9368199368199378651047Clostridium botulinum E3 str. Alaska E43, complete genomehypothetical protein9e-54210
NC_016584:138348:159400159400160359960Desulfosporosinus orientis DSM 765 chromosome, complete genomeexopolysaccharide biosynthesis protein2e-43176
NC_016584:138348:1574701574701593561887Desulfosporosinus orientis DSM 765 chromosome, complete genomeexopolysaccharide biosynthesis protein2e-39163
NC_015690:1542061:1546886154688615481121227Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein2e-37156
NC_016935:2069562:2074387207438720756131227Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein4e-37155
NC_016609:1774259:180284218028421803768927Niastella koreensis GR20-10 chromosome, complete genomehypothetical protein1e-1584
NC_013061:1:128412842153870Pedobacter heparinus DSM 2366, complete genomehypothetical protein8e-1374.7
NC_014828:541874:5670555670555725925538Ethanoligenens harbinense YUAN-3 chromosome, complete genomeLPXTG-motif cell wall anchor domain protein1e-1170.9
NC_015277:2283530:229010622901062291020915Sphingobacterium sp. 21 chromosome, complete genomeexopolysaccharide biosynthesis protein5e-1065.5
NC_014377:1871333:1887649188764918906002952Thermosediminibacter oceani DSM 16646 chromosome, complete genomecopper amine oxidase domain protein3e-0859.7
NC_015277:2283530:229737222973722298214843Sphingobacterium sp. 21 chromosome, complete genomehypothetical protein8e-0858.2
NC_014915:3320768:3323701332370133256591959Geobacillus sp. Y412MC52 chromosome, complete genomehypothetical protein1e-0757.8
NC_013411:3314799:3317732331773233196901959Geobacillus sp. Y412MC61, complete genomehypothetical protein1e-0757.8
NC_004663:5099845:511694251169425117868927Bacteroides thetaiotaomicron VPI-5482, complete genomehypothetical protein2e-0756.6
NC_016048:693416:711629711629712558930Oscillibacter valericigenes Sjm18-20, complete genomehypothetical protein3e-0756.6
NC_016593:3249767:3253889325388932558471959Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completehypothetical protein7e-0755.1
NC_009633:4485869:450005545000554500765711Alkaliphilus metalliredigens QYMF chromosome, complete genomeexopolysaccharide biosynthesis protein1e-0654.7