Pre_GI: BLASTP Hits

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Query: NC_003306:22228:41394 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 41394, End: 42281, Length: 888

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003064:22535:417014170142588888Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein4e-171600
NC_007494:1:113081130812216909Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequenceParB-like nuclease1e-77290
NC_009050:567209:587081587081587989909Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRepB plasmid partition4e-76285
NC_008358:2638245:267480326748032675714912Hyphomonas neptunium ATCC 15444, complete genomeParB family protein1e-75283
NC_004463:925140:947412947412948326915Bradyrhizobium japonicum USDA 110, complete genomepartitioning protein3e-75281
NC_019973:6102442:611605961160596116952894Mesorhizobium australicum WSM2073, complete genomeputative transcriptional regulator9e-72270
NC_011992:3375929:339069333906933391604912Acidovorax ebreus TPSY, complete genomeparB-like partition protein2e-70266
NC_007794:561623:570248570248571147900Novosphingobium aromaticivorans DSM 12444, complete genomeRepB plasmid partition2e-69263
NC_008825:3161146:317093431709343171833900Methylibium petroleiphilum PM1, complete genomeputative ParB-like partioning protein1e-69263
NC_012660:5793200:582339658233965824304909Pseudomonas fluorescens SBW25 chromosome, complete genomeputative ParB-like protein2e-69262
NC_008825:1258500:128814412881441289043900Methylibium petroleiphilum PM1, complete genomehypothetical protein2e-69262
NC_008826:170609:170609170609171508900Methylibium petroleiphilum PM1 plasmid RPME01, complete sequencehypothetical protein2e-69262
NC_015381:1:703270327946915Burkholderia gladioli BSR3 chromosome 1, complete sequenceputative ParB-like protein3e-64245
NC_020209:4768500:479624847962484797156909Pseudomonas poae RE*1-1-14, complete genomeParB family protein9e-61233
NC_004578:20738:418524185242757906Pseudomonas syringae pv. tomato str. DC3000, complete genomeParB family protein4e-60231
NC_005773:106000:112706112706113614909Pseudomonas syringae pv. phaseolicola 1448A, complete genomeParB family protein6e-59227
NC_010814:1441327:144464914446491445515867Geobacter lovleyi SZ, complete genomeparB-like partition protein3e-55215
NC_016514:3573400:358364235836423584538897Enterobacter cloacae EcWSU1 chromosome, complete genomeparB family protein3e-49195
NC_014752:834616:871808871808872554747Neisseria lactamica ST-640, complete genomehypothetical protein3e-48192
NC_009801:2898426:290951329095132910409897Escherichia coli E24377A, complete genomeParB family protein2e-47189
NC_012947:1106000:111342611134261114322897Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeParB domain protein nuclease2e-47189
NC_012967:2669182:268047526804752681371897Escherichia coli B str. REL606 chromosome, complete genomeParB family protein2e-47189
NC_007651:72952:824928249283133642Burkholderia thailandensis E264 chromosome I, complete sequencestage 0 sporulation protein J, putative9e-46184
NC_010725:3315007:333987333398733340397525Methylobacterium populi BJ001, complete genome1e-45183
NC_009436:3117661:312865431286543129550897Enterobacter sp. 638, complete genomenuclease5e-45181
NC_009708:915814:927592927592928482891Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeParB family protein5e-45181
NC_014562:2563466:257343525734352574307873Pantoea vagans C9-1 chromosome, complete genomepartitioning protein9e-33140
NC_011283:4438500:447210044721004472972873Klebsiella pneumoniae 342 chromosome, complete genomeParB family protein3e-32139
NC_007651:3064530:315828331582833158693411Burkholderia thailandensis E264 chromosome I, complete sequencestage 0 sporulation protein J, putative5e-26118
NC_007333:3626510:363603936360393636926888Thermobifida fusca YX, complete genomeParB-like partition protein3e-0962.8
NC_016629:1175828:118484011848401185757918Desulfovibrio africanus str. Walvis Bay chromosome, completeparB-like partition protein3e-0859.3
NC_011898:4044500:406076140607614061606846Clostridium cellulolyticum H10, complete genomeparB-like partition protein4e-0858.9
NC_009328:3504454:354266635426663543511846Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeDNA binding protein4e-0858.9
NC_008578:2431074:243732224373222438287966Acidothermus cellulolyticus 11B, complete genomeparB-like partition proteins5e-0858.5
NC_020134:2948000:296655529665552967397843Clostridium stercorarium subsp. stercorarium DSM 8532, completeparB-like partition protein8e-0858.2
NC_007760:3735749:3739360373936037410571698Anaeromyxobacter dehalogenans 2CP-C, complete genomeparB-like partition protein9e-0857.8
NC_011661:203929:203929203929204747819Dictyoglomus turgidum DSM 6724, complete genomeparB-like partition protein9e-0857.8
NC_016627:4871875:488980648898064890639834Clostridium clariflavum DSM 19732 chromosome, complete genomeParB-like partition protein8e-0857.8
NC_016776:5174606:5182449518244951841611713Bacteroides fragilis 638R, complete genomeputative ParB-family protein3e-0755.8
NC_005241:380415:392322392322393308987Ralstonia eutropha H16 megaplasmid pHG1, complete sequencepartitioning protein3e-0755.8
NC_003210:2879906:288021728802172881071855Listeria monocytogenes EGD-e, complete genomehypothetical protein4e-0755.5
NC_014210:5752651:576188657618865762830945Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,parB-like partition protein5e-0755.5
NC_013595:10329633:103357461033574610336720975Streptosporangium roseum DSM 43021, complete genomeParB-like partition protein6e-0755.1
NC_018664:3073022:308804730880473088895849Clostridium acidurici 9a chromosome, complete genomeparB-like partition protein6e-0755.1
NC_003228:2010643:2067285206728520689971713Bacteroides fragilis NCTC 9343, complete genomeputative ParB-family protein5e-0755.1
NC_015458:3077804:308268330826833083603921Pusillimonas sp. T7-7 chromosome, complete genomechromosome partitioning protein7e-0754.7
NC_009523:1025556:103244010324401033261822Roseiflexus sp. RS-1 chromosome, complete genomeparB-like partition protein1e-0654.3
NC_013521:4240468:4246467424646742476451179Sanguibacter keddieii DSM 10542, complete genomechromosome segregation DNA-binding protein2e-0653.5
NC_014251:243700:244951244951245709759Streptococcus pneumoniae TCH8431/19A chromosome, complete genomeParB family partitioning protein2e-0653.5
NC_013958:29548:312183121832072855Nitrosococcus halophilus Nc4 plasmid pNHAL01, complete sequenceparB-like partition protein2e-0653.1
NC_015318:981989:990537990537991346810Hippea maritima DSM 10411 chromosome, complete genomeparB-like partition protein3e-0652.8
NC_016935:8716704:872927487292748730134861Paenibacillus mucilaginosus 3016 chromosome, complete genomeParB-like nuclease domain-containing protein4e-0652.4
NC_015690:8645500:865404586540458654905861Paenibacillus mucilaginosus KNP414 chromosome, complete genomeSpo0J-like protein, ParB-like nuclease domain-containing protein4e-0652.4
NC_007164:2446879:2456277245627724578031527Corynebacterium jeikeium K411, complete genomechromosome partitioning protein ParB7e-0651.6
NC_015675:3046852:304685230468523047679828Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRepB plasmid partition7e-0651.6
NC_014151:4106624:4110144411014441112951152Cellulomonas flavigena DSM 20109 chromosome, complete genomeparB-like partition protein8e-0651.2