Pre_GI Gene

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Host: NC_020134 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_020134:2948000 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
29480112948592582hypothetical protein
294883129502521422hypothetical protein
29502672950923657hypothetical protein
295109329528981806multi-sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
29529732953668696Two component transcriptional regulator winged helix familyQuickGO ontologyBLASTP
295385829550601203macrolide export ATP-bindingpermease protein MacBQuickGO ontologyBLASTP
295506429563861323efflux transporter RND family MFP subunitQuickGO ontologyBLASTP
29564252957174750hypothetical proteinBLASTP
29571952957932738ABC transporter-like proteinQuickGO ontologyBLASTP
29579242958082159hypothetical protein
296380729663292523DNA gyrase subunit AQuickGO ontologyBLASTP
29664272966546120hypothetical protein
29665552967397843parB-like partition proteinQuickGO ontologyBLASTP
29675662968288723ribosomal RNA small subunit methyltransferase GQuickGO ontologyBLASTP
296827829701671890tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmGQuickGO ontologyBLASTP
297018029714301251tRNA modification GTPase MnmEQuickGO ontologyBLASTP
29716962972334639protein JagQuickGO ontologyBLASTP
29723382973270933membrane protein insertase YidCOxa1 familyQuickGO ontologyBLASTP