Pre_GI: BLASTP Hits

Some Help

Query: NC_003306:22228:24428 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 24428, End: 26161, Length: 1734

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003064:22535:2460024600264681869Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein01110
NC_009659:1129066:1158048115804811598651818Janthinobacterium sp. Marseille chromosome, complete genomehypothetical protein0686
NC_003919:4618988:4636552463655246382341683Xanthomonas axonopodis pv. citri str. 306, complete genomehypothetical protein4e-164578
NC_020260:603796:6273036273036287601458Cronobacter sakazakii Sp291, complete genomehypothetical protein1e-136487
NC_015416:621513:6320776320776339181842Methanosaeta concilii GP-6 chromosome, complete genomehypothetical protein7e-67255
NC_011740:2859933:2868232286823228702802049Escherichia fergusonii ATCC 35469, complete genomehypothetical protein4e-56219
NC_012691:1743038:1778403177840317803551953Tolumonas auensis DSM 9187, complete genomeRecF/RecN/SMC N domain protein1e-55218
NC_011768:79297:8994689946919612016Desulfatibacillum alkenivorans AK-01, complete genomeSMC domain protein2e-50200
NC_008435:4530797:4542885454288545446331749Rhodopseudomonas palustris BisA53, complete genomeATP-dependent endonuclease of the OLD family-like protein2e-48194
NC_020181:5130513:5143737514373751454881752Enterobacter aerogenes EA1509E, complete genomeATP-dependent endonuclease of the OLD family-like protein2e-46187
NC_011283:1178500:1185994118599411877451752Klebsiella pneumoniae 342 chromosome, complete genomeOLD family TOPRIM nucleotidyl transferase/hydrolase domain protein2e-46187
NC_017082:6321124:6328590632859063306292040Bradyrhizobium sp. S23321, complete genomeATP-dependent OLD family endonuclease4e-44179
NC_007760:3735749:3744893374489337471692277Anaeromyxobacter dehalogenans 2CP-C, complete genomeOLD family-like ATP-dependent endonuclease6e-43176
NC_016609:2150863:2167046216704621689921947Niastella koreensis GR20-10 chromosome, complete genomeATP-dependent OLD family endonuclease6e-43176
NC_007925:3933765:3937108393710839391952088Rhodopseudomonas palustris BisB18, complete genomeSMC protein-like3e-41170
NC_018868:619113:6601256601256620771953Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomehypothetical protein9e-39162
NC_014507:906960:9169179169179188451929Methanoplanus petrolearius DSM 11571 chromosome, complete genomeSMC domain-containing protein6e-39162
NC_015660:3328595:3345598334559833475441947Geobacillus thermoglucosidasius C56-YS93 chromosome, completeSMC domain-containing protein6e-39162
NC_007907:5185510:5270756527075652728822127Desulfitobacterium hafniense Y51, complete genomehypothetical protein3e-38160
NC_010688:2781624:2832215283221528340021788Xanthomonas campestris pv. campestris, complete genomeHypothetical protein ybjD.1e-37158
NC_021184:1484352:1502760150276015045771818Desulfotomaculum gibsoniae DSM 7213, complete genomeputative ATP-dependent endonuclease of the OLD family4e-37156
NC_014311:3076519:3095153309515330969521800Ralstonia solanacearum PSI07 chromosome, complete genomehypothetical protein8e-37155
NC_003552:2634828:2644101264410126461702070Methanosarcina acetivorans C2A, complete genomehypothetical protein1e-36154
NC_012691:2614603:2652902265290226546891788Tolumonas auensis DSM 9187, complete genomehypothetical protein3e-36153
NC_009075:15017:2882528825306091785Burkholderia pseudomallei 668 chromosome II, complete sequencehypothetical protein8e-35149
NC_009138:1974935:2008206200820620099901785Herminiimonas arsenicoxydans, complete genomehypothetical protein2e-34147
NC_007760:3655433:3677752367775236795991848Anaeromyxobacter dehalogenans 2CP-C, complete genomeATP-dependent endonuclease of the OLD family-like2e-34147
NC_013421:1780722:1780722178072217825121791Pectobacterium wasabiae WPP163, complete genomehypothetical protein6e-34145
NC_007974:2048000:2083641208364120854371797Ralstonia metallidurans CH34 chromosome 2, complete sequenceputative exonuclease8e-34145
NC_016943:21364:2534925349270461698Blastococcus saxobsidens DD2, complete genomeputative exonuclease1e-33145
NC_010465:3431500:3435097343509734371452049Yersinia pseudotuberculosis YPIII, complete genomeSMC (structural maintenance of chromosomes) family protein2e-33144
NC_013850:1753716:1761023176102317628071785Klebsiella variicola At-22 chromosome, complete genomehypothetical protein1e-33144
NC_007951:2087385:2102514210251421043551842Burkholderia xenovorans LB400 chromosome 1, complete sequencePredicted ATP-dependent endonuclease of the OLD family6e-33142
NC_018645:3029785:3038101303810130402422142Desulfobacula toluolica Tol2, complete genomeDNA replication and repair protein, relted to recF8e-32139
NS_000195:526983:5434625434625453511890Candidatus Cloacamonas acidaminovoranshypothetical protein3e-30133
NC_016887:3201976:3214002321400232158101809Nocardia cyriacigeorgica GUH-2, complete genomeputative ATP-dependent endonuclease of the OLD family-like protein2e-26121
NC_009792:3665369:3676649367664936787842136Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein6e-25116
NC_008781:1038158:1047602104760210495151914Polaromonas naphthalenivorans CJ2, complete genomeATP-dependent endonuclease of the OLD family9e-23108
NC_015177:1822000:1839871183987118420122142Pedobacter saltans DSM 12145 chromosome, complete genomeSMC domain protein3e-22107
NC_008752:725189:7360817360817382192139Acidovorax avenae subsp. citrulli AAC00-1, complete genomehypothetical protein3e-22107
NC_008609:1976403:2015460201546020175712112Pelobacter propionicus DSM 2379, complete genomehypothetical protein7e-22105
NC_010322:4623867:4639471463947146411951725Pseudomonas putida GB-1 chromosome, complete genomeSMC domain-containing protein5e-21103
NC_016817:185000:2021482021482033381191Pantoea ananatis LMG 5342 plasmid pPANA10, complete sequenceSMC (structural maintenance of chromosomes) family protein6e-1996.3
NC_016902:44744:5839258392600921701Escherichia coli KO11FL chromosome, complete genomeSMC domain-containing protein2e-1894.7
CP002185:4035502:4045981404598140476811701Escherichia coli W, complete genomehypothetical protein2e-1894.7
CP002516:44744:5839258392600921701Escherichia coli KO11, complete genomeSMC domain-containing protein2e-1894.7
NC_013198:394000:4536564536564557462091Lactobacillus rhamnosus GG, complete genomepredicted ORF3e-1893.6
NC_015422:2806832:2827485282748528295092025Alicycliphilus denitrificans K601 chromosome, complete genomeATP-dependent OLD family endonuclease2e-1791.3
NC_013132:5250385:5272842527284252751842343Chitinophaga pinensis DSM 2588, complete genomeATP-dependent endonuclease, OLD family2e-1790.9
NC_018866:1328623:1339251133925113413712121Dehalobacter sp. DCA chromosome, complete genomehypothetical protein6e-1789.7
NC_009483:2136424:2142567214256721444891923Geobacter uraniireducens Rf4 chromosome, complete genomeATP-dependent OLD family endonuclease2e-1687.8
NC_017187:1564403:1579166157916615808781713Arcobacter butzleri ED-1, complete genomeputative endonuclease3e-1687.4
NC_015138:2069739:2080545208054520829532409Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completehypothetical protein3e-1687
NC_009441:4328035:4346439434643943488202382Flavobacterium johnsoniae UW101 chromosome, complete genomeATP-dependent OLD family endonuclease5e-1686.7
NC_010338:4108280:4127866412786641299412076Caulobacter sp. K31, complete genomeconserved hypothetical membrane spanning protein4e-1686.7
NC_008463:5313527:5348012534801253504352424Pseudomonas aeruginosa UCBPP-PA14, complete genomehypothetical protein1e-1585.1
NC_016776:1609476:1611260161126016129781719Bacteroides fragilis 638R, complete genomeputative ATP-dependent endonuclease protein3e-1584
NC_015387:1091403:1098920109892011003771458Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeSMC domain protein7e-1582.4
NC_014803:709000:7142497142497160841836Pseudoalteromonas sp. SM9913 chromosome chromosome I, completehypothetical protein8e-1582.4
NC_019904:5308998:5319280531928053213012022Echinicola vietnamensis DSM 17526 chromosome, complete genomeOLD family ATP-dependent endonuclease1e-1482
NC_018665:2163713:2175404217540421774522049Exiguobacterium antarcticum B7 chromosome, complete genomeHypothetical protein3e-1480.5
NC_013131:7945280:7983002798300279850112010Catenulispora acidiphila DSM 44928, complete genomeATP-dependent OLD family endonuclease3e-1480.5
NC_009442:908507:9085079085079105942088Streptococcus suis 05ZYH33 chromosome, complete genomehypothetical protein4e-1480.1
NC_017030:9818064:9827517982751798295202004Corallococcus coralloides DSM 2259 chromosome, complete genomeATP-dependent OLD family endonuclease7e-1479.3
NC_008542:197500:2275572275572296262070Burkholderia cenocepacia HI2424 chromosome 1, complete sequenceATP-dependent endonuclease of the OLD family-like protein2e-1378.2
NC_003919:4618988:463939546393954639580186Xanthomonas axonopodis pv. citri str. 306, complete genomerecombination related protein2e-1377.8
NC_013456:1843000:1849597184959718517412145Vibrio sp. Ex25 chromosome 1, complete genomepathogenesis related protein2e-1377.8
NC_007929:1637261:1647690164769016497292040Lactobacillus salivarius subsp. salivarius UCC118, complete genomehypothetical protein4e-1377
NC_011901:2983555:2988278298827829903022025Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeATP-dependent OLD family endonuclease1e-1275.5
NC_011206:262844:2789572789572812782322Acidithiobacillus ferrooxidans ATCC 53993, complete genomeATP-dependent endonuclease, OLD family9e-1375.5
NC_010617:774914:7909067909067929842079Kocuria rhizophila DC2201, complete genomehypothetical protein2e-1274.3
NC_009437:685214:7006837006837024281746Caldicellulosiruptor saccharolyticus DSM 8903, complete genomeATP-dependent OLD family endonuclease3e-1273.9
NC_009801:3374501:3385117338511733869401824Escherichia coli E24377A, complete genomehypothetical protein4e-1273.6
NC_019972:145617:1691041691041711852082Methanomethylovorans hollandica DSM 15978 plasmid pMETHO01,hypothetical protein1e-1172
NC_002516:2113186:2120225212022521222221998Pseudomonas aeruginosa PAO1, complete genomehypothetical protein2e-1171.6
NC_017188:3839478:3851073385107338531782106Bacillus amyloliquefaciens TA208 chromosome, complete genometopoisomerase-primase (TOPRIM) nucleotidyl transferase/hydrolase2e-1171.6
NC_017190:3879148:3910644391064439128152172Bacillus amyloliquefaciens LL3 chromosome, complete genomehypothetical protein2e-1171.2
NC_017191:3841170:3852765385276538549362172Bacillus amyloliquefaciens XH7 chromosome, complete genomehypothetical protein2e-1171.2
NC_014376:3732547:3759236375923637612992064Clostridium saccharolyticum WM1 chromosome, complete genomehypothetical protein2e-1171.2
NC_007946:289425:2996222996223017692148Escherichia coli UTI89, complete genomehypothetical protein4e-1170.5
NC_007651:3064530:3116914311691431192682355Burkholderia thailandensis E264 chromosome I, complete sequencehypothetical protein4e-1170.5
NC_016816:1545354:1563416156341615655422127Pantoea ananatis LMG 5342, complete genomeputative OLD family ATP-dependent endonuclease7e-1169.3
NC_009076:3765441:3791874379187437935141641Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein1e-1068.6
NC_015733:3736104:3759442375944237617392298Pseudomonas putida S16 chromosome, complete genomehypothetical protein2e-1068.2
NC_014618:690056:7142527142527165672316Enterobacter cloacae SCF1 chromosome, complete genomeATP-dependent endonuclease3e-1067.4
NC_015730:1918000:1924944192494419271842241Roseobacter litoralis Och 149 chromosome, complete genomehypothetical protein3e-1067
NC_014974:404015:4173414173414189271587Thermus scotoductus SA-01 chromosome, complete genomeputative ATP-dependent endonuclease of the OLD family4e-1067
NC_007951:2904644:2921660292166029240082349Burkholderia xenovorans LB400 chromosome 1, complete sequencePredicted ATP-dependent endonuclease, OLD family5e-1066.6
NC_018867:10238:5389753897557921896Dehalobacter sp. CF chromosome, complete genomeputative ATP-dependent endonuclease of the OLD family6e-1066.2
NC_010995:4460413:4470565447056544728172253Cellvibrio japonicus Ueda107, complete genomehypothetical protein1e-0965.5
NC_015379:908904:9647329647329669302199Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,hypothetical protein3e-0964.3
NC_013204:989103:99948499948410011781695Eggerthella lenta DSM 2243, complete genomeSMC domain protein3e-0964.3
NC_009972:606393:6354516354516375772127Herpetosiphon aurantiacus ATCC 23779 chromosome, complete genomeATP-dependent OLD family endonuclease2e-0964.3
NC_010645:369408:3822983822983838661569Bordetella avium 197N, complete genomehypothetical protein5e-0963.5
NC_013894:464907:4724864724864741711686Thermocrinis albus DSM 14484 chromosome, complete genomeATP-dependent endonuclease of the OLD family-like protein6e-0962.8
NC_014306:4106569:4116312411631241184472136Erwinia billingiae Eb661, complete genomehypothetical protein8e-0962.8
NC_014973:595153:6177616177616196741914Geobacter sp. M18 chromosome, complete genomeSMC domain-containing protein8e-0962.8
NC_002947:4167500:4182219418221941842222004Pseudomonas putida KT2440, complete genomehypothetical protein9e-0962.4
NC_008686:1383891:1409683140968314119172235Paracoccus denitrificans PD1222 chromosome 1, complete sequencehypothetical protein1e-0862.4
NC_008750:807446:8187798187798210972319Shewanella sp. W3-18-1, complete genomehypothetical protein2e-0861.6
NC_014551:2510000:2516500251650025183141815Bacillus amyloliquefaciens DSM 7, complete genomeOvercoming lysogenization defect protein2e-0861.6
NC_004551:100840:1008401008401024111572Tropheryma whipplei TW08/27, complete genomeconserved hypothetical protein (ATP-binding)2e-0861.2
NC_010524:2117347:2124287212428721258551569Leptothrix cholodnii SP-6, complete genomehypothetical protein2e-0861.2
NC_008757:151862:1683401683401702771938Polaromonas naphthalenivorans CJ2 plasmid pPNAP01, completetranscriptional regulator, Fis family2e-0860.8
NC_015977:935798:9475199475199492851767Roseburia hominis A2-183 chromosome, complete genomehypothetical protein3e-0860.8
NC_014931:724102:7362577362577378221566Variovorax paradoxus EPS chromosome, complete genomehypothetical protein3e-0860.8
NC_018645:3029785:3045540304554030473121773Desulfobacula toluolica Tol2, complete genomeATP-dependent endonuclease, OLD family5e-0859.7
NC_009348:2362163:2383812238381223854491638Aeromonas salmonicida subsp. salmonicida A449, complete genomeATP-dependent endonuclease9e-0858.9
NC_006085:925604:9282669282669298731608Propionibacterium acnes KPA171202, complete genomehypothetical protein2e-0758.2
NC_016620:781995:7861157861157878391725Bacteriovorax marinus SJ, complete genomehypothetical protein2e-0757.8
NC_016901:3936944:3950612395061239523211710Shewanella baltica OS678 chromosome, complete genomehypothetical protein3e-0757.4
NC_009665:2219082:2229030222903022307391710Shewanella baltica OS185 chromosome, complete genomehypothetical protein3e-0757.4
NC_009997:3988980:4002648400264840043571710Shewanella baltica OS195, complete genomehypothetical protein3e-0757.4
NC_014121:598669:6080956080956098341740Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeATP-dependent OLD family endonuclease3e-0757.4
NC_007508:237771:2630202630202640331014Xanthomonas campestris pv. vesicatoria str. 85-10, complete genomehypothetical protein4e-0757
NC_008321:2190000:2195186219518621969551770Shewanella sp. MR-4, complete genomeATP-dependent endonuclease of the OLD family-like protein6e-0756.6
NC_011837:3226500:3241738324173832433571620Clostridium kluyveri NBRC 12016, complete genomehypothetical protein6e-0756.2
NC_009706:3291330:3310236331023633118551620Clostridium kluyveri DSM 555 chromosome, complete genomeATP-dependent endonuclease6e-0756.2
NC_015660:3174424:3192684319268431945971914Geobacillus thermoglucosidasius C56-YS93 chromosome, completeputative OLD protein1e-0655.5
NC_013939:1625491:1627198162719816288411644Deferribacter desulfuricans SSM1, complete genomeDNA repair protein RecN4e-0653.5
NC_016860:3995445:4010647401064740122121566Salmonella enterica subsp. enterica serovar Typhimurium strputative OLD family ATP-dependent endonuclease1e-0552.4