Pre_GI: BLASTP Hits

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Query: NC_003063:757999:761406 Agrobacterium tumefaciens str. C58 chromosome linear, complete

Start: 761406, End: 762080, Length: 675

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003305:1297785:131267613126761313407732Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family2e-110398
NC_010676:304405:323839323839324528690Burkholderia phytofirmans PsJN chromosome 2, complete sequenceGntR domain protein7e-31133
NC_014118:1528851:152885115288511529540690Burkholderia sp. CCGE1002 chromosome chromosome 2, completeregulatory protein GntR HTH2e-30132
NC_003305:1743939:177186217718621772575714Agrobacterium tumefaciens str. C58 chromosome linear, completetranscriptional regulator, GntR family1e-1479.7
NC_007963:2777066:277978327797832780505723Chromohalobacter salexigens DSM 3043, complete genomeGntR-like protein2e-1479.7
NC_007275:1:149981499815699702Pseudomonas syringae pv. phaseolicola 1448A small plasmid, completetranscriptional regulator, GntR family8e-1373.9
NC_008027:775896:799660799660800427768Pseudomonas entomophila L48, complete genometranscriptional regulator, GntR family3e-1168.6
NC_016935:3819500:382680038268003827531732Paenibacillus mucilaginosus 3016 chromosome, complete genometranscriptional regulator3e-1168.6
NC_015690:3269000:327636032763603277091732Paenibacillus mucilaginosus KNP414 chromosome, complete genometranscriptional regulator4e-1168.2
NC_011831:1336779:134177413417741342454681Chloroflexus aggregans DSM 9485, complete genomeregulatory protein GntR HTH4e-1065.1
NC_012759:3648500:366540336654033666179777Escherichia coli BW2952 chromosome, complete genomeDNA-binding transcriptional repressor LldR4e-1065.1
NC_004337:3590323:375165237516523752428777Shigella flexneri 2a str. 301, complete genometranscriptional regulator4e-1065.1
NC_004193:375416:394239394239394949711Oceanobacillus iheyensis HTE831, complete genometranscriptional regulator4e-1064.7
NC_014479:2505823:252667125266712527399729Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeGntR family transcriptional regulator7e-1063.9
NC_007606:3755155:377484737748473775623777Shigella dysenteriae Sd197, complete genometranscriptional regulator1e-0963.5
NC_016612:178864:186603186603187319717Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator1e-0963.2
NC_013517:825100:828669828669829412744Sebaldella termitidis ATCC 33386, complete genometranscriptional regulator, GntR family2e-0962.8
NC_016947:666627:675648675648676442795Mycobacterium intracellulare MOTT-02 chromosome, complete genomeregulatory protein2e-0962.8
NC_020291:5093138:511164951116495112383735Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeregulatory protein GntR, HTH1e-0860.1
NC_009617:3647500:366042136604213661161741Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeGntR family transcriptional regulator2e-0859.7
NC_017095:119361:147716147716148471756Fervidobacterium pennivorans DSM 9078 chromosome, complete genometranscriptional regulator1e-0859.7
NC_016582:11820671:118416551184165511842452798Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator3e-0858.5
NC_010125:1011430:101791310179131018671759Gluconacetobacter diazotrophicus PAl 5, complete genomeputative transcriptional regulator protein, GntR family3e-0858.5
NC_016027:2512297:252258525225852523292708Gluconacetobacter xylinus NBRC 3288, complete genomeGntR family transcriptional regulator5e-0857.8
NC_011274:1544653:157101315710131571732720Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91GntR family regulatory protein9e-0857.4
NC_011365:1865687:188920618892061889964759Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeGntR family transcriptional regulator8e-0857.4
NC_011751:3453683:349481534948153495549735Escherichia coli UMN026 chromosome, complete genometranscriptional regulator8e-0857.4
NC_016023:755237:755237755237755947711Bacillus coagulans 36D1 chromosome, complete genomeGntR domain-containing protein7e-0857.4
NC_011745:4862218:487607548760754876809735Escherichia coli ED1a chromosome, complete genomeTranscriptional regulator1e-0756.6
NC_015733:3736104:378283237828323783611780Pseudomonas putida S16 chromosome, complete genomeDNA-binding transcriptional regulator GlcC1e-0756.2
NC_006510:2044347:206127920612792062007729Geobacillus kaustophilus HTA426, complete genometranscriptional regulator2e-0755.8
NC_007519:1244198:125890712589071259602696Desulfovibrio alaskensis G20 chromosome, complete genomeGntR family transcriptional regulator3e-0755.5
NC_012880:1091486:111621711162171116951735Dickeya dadantii Ech703, complete genomeGntR domain protein3e-0755.5
NC_016948:678939:688007688007688786780Mycobacterium intracellulare MOTT-64 chromosome, complete genometranscriptional regulator4e-0755.1
NC_013729:380312:391510391510392364855Kribbella flavida DSM 17836, complete genometranscriptional regulator, GntR family4e-0755.1
NC_007644:1352794:135436113543611355110750Moorella thermoacetica ATCC 39073, complete genomeregulatory protein GntR, HTH3e-0755.1
NC_009633:1595501:1620053162005316214501398Alkaliphilus metalliredigens QYMF chromosome, complete genomeGntR family transcriptional regulator4e-0754.7
NC_013740:1218429:123236812323681233063696Acidaminococcus fermentans DSM 20731, complete genomeGntR domain protein5e-0754.7
NC_015687:2632557:265543326554332656128696Clostridium acetobutylicum DSM 1731 chromosome, complete genomeFadR family transcriptional regulator6e-0754.3
NC_021182:3525523:354004635400463540753708Clostridium pasteurianum BC1, complete genometranscriptional regulator1e-0653.5
NC_015733:3923800:392690539269053927591687Pseudomonas putida S16 chromosome, complete genomeGntR family transcriptional regulator1e-0653.1
NC_011898:1558208:156763615676361568325690Clostridium cellulolyticum H10, complete genomeGntR domain protein2e-0652.8
NC_011832:913994:952978952978953670693Candidatus Methanosphaerula palustris E1-9c, complete genomeGntR domain protein2e-0652.4
NC_020291:5808856:583221158322115832921711Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeHTH-type transcriptional regulator GmuR3e-0652
NC_016612:361417:361417361417362190774Klebsiella oxytoca KCTC 1686 chromosome, complete genomeGntR family transcriptional regulator protein3e-0652
NC_019771:1356000:1375922137592213774091488Anabaena cylindrica PCC 7122, complete genometranscriptional regulator, GntR family3e-0652
NC_007912:1231436:123868412386841239451768Saccharophagus degradans 2-40, complete genome1,4-alpha-glucan branching enzyme5e-0651.6
NC_016935:4435759:444325444432544444000747Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein5e-0651.6
NC_016745:123772:1251211251211265391419Oceanimonas sp. GK1 chromosome, complete genomeGntR family transcriptional regulator4e-0651.6
NC_013093:1411882:142248314224831423250768Actinosynnema mirum DSM 43827, complete genometranscriptional regulator, GntR family4e-0651.6
NC_013595:9547254:956468295646829565155474Streptosporangium roseum DSM 43021, complete genomeputative transcriptional regulator, GntR family6e-0651.2
NC_015556:4118304:413267941326794133422744Pseudomonas fulva 12-X chromosome, complete genomeGntR domain protein7e-0650.8
NC_017208:64500:8740587405888171413Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeGntR family transcriptional regulator8e-0650.8
NC_016582:9664000:967760596776059678303699Streptomyces bingchenggensis BCW-1 chromosome, complete genomeGntR family transcriptional regulator1e-0550.4
NC_016048:3667890:367938436793843680112729Oscillibacter valericigenes Sjm18-20, complete genomeputative GntR family transcriptional regulator1e-0550.4