Pre_GI: OUP Neighbours

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Query: NC_007576:1854136 Lactobacillus sakei subsp. sakei 23K, complete genome

D: 31.3415

Host Lineage: Lactobacillus sakei; Lactobacillus; Lactobacillaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This strain (23K) was originally isolated from a French sausage. They are commonly found in the oral, vaginal, and intestinal regions of many animals. They are important industrial microbes that contribute to the production of cheese, yogurt, and other products such as fermented milks, all stemming from the production of lactic acid, which inhibits the growth of other organisms as well as lowering the pH of the food product. Industrial production requires the use of starter cultures, which are carefully cultivated, created, and maintained, which produce specific end products during fermentation that impart flavor to the final product, as well as contributing important metabolic reactions, such as the breakdown of milk proteins during cheese production. The end product of fermentation, lactic acid, is also being used as a starter molecule for complex organic molecule syntheses. Lactobacillus sakei is the predominant lactic acid bacteria found on fresh meat. This organism is used as a starter in the production of fermented meat products, and plays a major role in preserving meat products by inhibiting the growth of other bacteria.

Number of Neighbours: 17




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_008497:32160Lactobacillus brevis ATCC 367, complete genome75.0031 %Subject ←→ Query26.6719
NC_008497:79144*Lactobacillus brevis ATCC 367, complete genome80.1654 %Subject ←→ Query27.061
NC_008497:556365*Lactobacillus brevis ATCC 367, complete genome80.2757 %Subject ←→ Query27.4289
NC_008497:447427*Lactobacillus brevis ATCC 367, complete genome78.4007 %Subject ←→ Query27.6386
NC_007520:1940120*Thiomicrospira crunogena XCL-2, complete genome76.2531 %Subject ←→ Query31.019
NC_007520:2128178*Thiomicrospira crunogena XCL-2, complete genome76.152 %Subject ←→ Query31.6498
NC_007576:1747662*Lactobacillus sakei subsp. sakei 23K, complete genome82.0956 %Subject ←→ Query32.1833
NC_015581:1043394Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome75.5821 %Subject ←→ Query32.6716
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genome75.5484 %Subject ←→ Query33.277
NC_013198:298000*Lactobacillus rhamnosus GG, complete genome75.5423 %Subject ←→ Query33.8795
NC_013199:1886271*Lactobacillus rhamnosus Lc 705, complete genome76.2377 %Subject ←→ Query35.0179
NC_008497:1498430*Lactobacillus brevis ATCC 367, complete genome79.4118 %Subject ←→ Query35.4937
NC_013198:813830*Lactobacillus rhamnosus GG, complete genome75.3523 %Subject ←→ Query37.9547
NC_015428:700479*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome75.2911 %Subject ←→ Query38.8838
NC_013199:811929*Lactobacillus rhamnosus Lc 705, complete genome75.046 %Subject ←→ Query39.2072
NC_010610:107500Lactobacillus fermentum IFO 3956, complete genome77.6991 %Subject Query41.4381
NC_010610:1178430Lactobacillus fermentum IFO 3956, complete genome75.9222 %Subject Query41.4499