Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_016894: Acetobacterium woodii DSM 1030 chromosome, complete genome

NCBI: NC_016894

Host Lineage: Acetobacterium woodii; Acetobacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Can use alternative electron acceptors like the lignin degradation product caffeate.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
17785310050222650Island text2.0780234.057751.3657Neighbours337BLASTN+77853.gbk
2377446*40122923784Island text2.1110329.729251.4659Neighbours320BLASTN+377446.gbk
31092005*111146219458Island text1.4918224.118441.0769Neighbours24BLASTN+1092005.gbk
42809125*282926120137Island text2.2757432.722849.1275Neighbours21BLASTN2809125.gbk
52931213*295523924027Island text1.6523322.805245.6511Neighbours24BLASTN2931213.gbk
63114394313521220819Island text1.542326.840538.9181Neighbours243114394.gbk
73329562*335397024409Island text2.1820431.223950.7133Neighbours320BLASTN3329562.gbk
83527364355280225439Island text1.510929.100536.2227Neighbours3373527364.gbk
93580274359909918826Island text1.5233924.108333.6277Neighbours22BLASTN+3580274.gbk
103935161396010624946Island text1.3968628.611430.5884Neighbours24BLASTN+3935161.gbk
113988180400609917920Island text1.576924.218833.7374Neighbours21BLASTN+3988180.gbk