Pre_GI: OUP Neighbours

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Query: NC_016894:2931213 Acetobacterium woodii DSM 1030 chromosome, complete genome

D: 22.8052

Host Lineage: Acetobacterium woodii; Acetobacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Can use alternative electron acceptors like the lignin degradation product caffeate.

Number of Neighbours: 78




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_016894:1092005*Acetobacterium woodii DSM 1030 chromosome, complete genome86.8781 %Subject ←→ Query24.1184
NC_016609:8772011Niastella koreensis GR20-10 chromosome, complete genome75.6281 %Subject ←→ Query24.7922
NC_007520:2391675Thiomicrospira crunogena XCL-2, complete genome75.5453 %Subject ←→ Query26.1369
NC_008497:32160Lactobacillus brevis ATCC 367, complete genome75.5147 %Subject ←→ Query26.6719
NC_016894:3114394Acetobacterium woodii DSM 1030 chromosome, complete genome85.4197 %Subject ←→ Query26.8405
NC_008497:79144*Lactobacillus brevis ATCC 367, complete genome77.2886 %Subject ←→ Query27.061
UCMB5137:1834999Bacillus atrophaeus UCMB-513777.1415 %Subject ←→ Query27.1036
NC_016609:8251438*Niastella koreensis GR20-10 chromosome, complete genome75.6403 %Subject ←→ Query27.1918
NC_018528:1932000Lactobacillus helveticus R0052 chromosome, complete genome80.3431 %Subject ←→ Query27.4908
NC_008497:447427*Lactobacillus brevis ATCC 367, complete genome75.3094 %Subject ←→ Query27.6386
NC_020134:1173000*Clostridium stercorarium subsp. stercorarium DSM 8532, complete75.337 %Subject ←→ Query27.7639
NC_013416:820989*Aggregatibacter actinomycetemcomitans D11S-1, complete genome75.6893 %Subject ←→ Query28.2199
NC_016894:3935161Acetobacterium woodii DSM 1030 chromosome, complete genome77.9657 %Subject ←→ Query28.6114
NC_014554:337268Lactobacillus plantarum subsp. plantarum ST-III chromosome,78.1587 %Subject ←→ Query29.7285
NC_016894:377446*Acetobacterium woodii DSM 1030 chromosome, complete genome85.4657 %Subject ←→ Query29.7292
NC_016023:1419217*Bacillus coagulans 36D1 chromosome, complete genome75.0153 %Subject ←→ Query30.2076
NC_015428:2291430*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.3603 %Subject ←→ Query30.5599
NC_007520:1940120*Thiomicrospira crunogena XCL-2, complete genome76.7831 %Subject ←→ Query31.019
NC_016894:3329562*Acetobacterium woodii DSM 1030 chromosome, complete genome85.0368 %Subject ←→ Query31.2239
NC_007576:1854136*Lactobacillus sakei subsp. sakei 23K, complete genome75.6863 %Subject ←→ Query31.3415
NC_015703:1992000*Runella slithyformis DSM 19594 chromosome, complete genome77.3192 %Subject ←→ Query31.5564
NC_016609:3576490Niastella koreensis GR20-10 chromosome, complete genome75.9773 %Subject ←→ Query32.1473
NC_007576:1747662*Lactobacillus sakei subsp. sakei 23K, complete genome76.826 %Subject ←→ Query32.1833
NC_014554:1019730Lactobacillus plantarum subsp. plantarum ST-III chromosome,78.7286 %Subject ←→ Query32.3869
NC_015703:4933430*Runella slithyformis DSM 19594 chromosome, complete genome75.9835 %Subject ←→ Query32.5197
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genome76.0907 %Subject Query33.277
NC_015572:1421782Methylomonas methanica MC09 chromosome, complete genome76.152 %Subject Query34.0502
NC_008497:1498430*Lactobacillus brevis ATCC 367, complete genome78.7745 %Subject Query35.4937
NC_017190:871352Bacillus amyloliquefaciens LL3 chromosome, complete genome78.6183 %Subject Query35.6367
NC_016610:2489415*Tannerella forsythia ATCC 43037 chromosome, complete genome77.3621 %Subject Query35.7292
NC_015703:5272193*Runella slithyformis DSM 19594 chromosome, complete genome75.4381 %Subject Query35.7512
NC_014624:1768226Eubacterium limosum KIST612 chromosome, complete genome81.296 %Subject Query35.9105
NC_017190:852171Bacillus amyloliquefaciens LL3 chromosome, complete genome75.3952 %Subject Query37.3966
NC_016641:2894899Paenibacillus terrae HPL-003 chromosome, complete genome77.9473 %Subject Query37.4094
NC_015428:823420*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome78.125 %Subject Query37.54
NC_013198:813830*Lactobacillus rhamnosus GG, complete genome75.098 %Subject Query37.9547
NC_015428:700479*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.5165 %Subject Query38.8838
NC_017188:2221705Bacillus amyloliquefaciens TA208 chromosome, complete genome76.7953 %Subject Query39.9662
NC_017191:2223740Bacillus amyloliquefaciens XH7 chromosome, complete genome76.3051 %Subject Query41.0813