Pre_GI: OUP Neighbours

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Query: NC_016894:3329562 Acetobacterium woodii DSM 1030 chromosome, complete genome

D: 31.2239

Host Lineage: Acetobacterium woodii; Acetobacterium; Eubacteriaceae; Clostridiales; Firmicutes; Bacteria

General Information: Acetobacterium woodii is a Gram positive, motile, strict anaerobic, acetogenic bacterium, that relies on Na+ as coupling ion in bioenergetic reactions. The organism can use a wide range of substrates, such as sugars, alcohols, methoxylated aromatic acids or C1 compounds. Electrons derived from these electron donors are used in the Wood-Ljungdahl-pathway where the organism fixes CO2 and produces acetate. The pathway of CO2-fixation is coupled to energy conservation via a chemiosmotic mechanism, one enzyme that seems to be involved is the Rnf complex. The produced Na+ gradient can be used to drive ATP-synthesis or flagella rotation. The ATP synthase is a member of the F1FO class of enzymes and has an unusual hybrid rotor. Can use alternative electron acceptors like the lignin degradation product caffeate.

Number of Neighbours: 142




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandSubject Host Description Compositional Similarity Proposed Island FlowSubject Island D
NC_007520:2391675Thiomicrospira crunogena XCL-2, complete genome76.3542 %Subject ←→ Query26.1369
NC_015222:2475792*Nitrosomonas sp. AL212 chromosome, complete genome75.1808 %Subject ←→ Query26.7854
NC_008497:79144*Lactobacillus brevis ATCC 367, complete genome77.4479 %Subject ←→ Query27.061
NC_015222:523915Nitrosomonas sp. AL212 chromosome, complete genome75.0888 %Subject ←→ Query27.4514
NC_015731:2400526*Nitrosomonas sp. Is79A3 chromosome, complete genome76.6912 %Subject ←→ Query27.4684
NC_018528:1932000Lactobacillus helveticus R0052 chromosome, complete genome79.8958 %Subject ←→ Query27.4908
NC_015222:1749553*Nitrosomonas sp. AL212 chromosome, complete genome77.8002 %Subject ←→ Query27.7237
NC_015222:1607757Nitrosomonas sp. AL212 chromosome, complete genome78.9032 %Subject ←→ Query29.1095
NC_015222:2136657*Nitrosomonas sp. AL212 chromosome, complete genome75.9038 %Subject ←→ Query29.1491
NC_012125:4716000*Salmonella enterica subsp. enterica serovar Paratyphi C strain75.4963 %Subject ←→ Query29.271
NC_013199:2426686Lactobacillus rhamnosus Lc 705, complete genome75.4351 %Subject ←→ Query29.5122
NC_014554:337268Lactobacillus plantarum subsp. plantarum ST-III chromosome,77.7604 %Subject ←→ Query29.7285
NC_016894:377446*Acetobacterium woodii DSM 1030 chromosome, complete genome87.2426 %Subject ←→ Query29.7292
NC_009655:1357486*Actinobacillus succinogenes 130Z chromosome, complete genome76.3879 %Subject ←→ Query29.7512
NC_009708:2537557*Yersinia pseudotuberculosis IP 31758 chromosome, complete genome75.5055 %Subject ←→ Query29.7767
NC_017154:2430093*Yersinia pestis D106004 chromosome, complete genome75.1746 %Subject ←→ Query30.4589
NC_012578:1838470*Vibrio cholerae M66-2 chromosome I, complete sequence75.3768 %Subject ←→ Query30.49
NC_013199:2386924Lactobacillus rhamnosus Lc 705, complete genome78.1771 %Subject ←→ Query30.5957
NC_012962:869295Photorhabdus asymbiotica, complete genome75.4442 %Subject ←→ Query30.8366
NC_017160:3426486Yersinia pestis D182038 chromosome, complete genome75.098 %Subject ←→ Query30.8479
NC_007520:1940120*Thiomicrospira crunogena XCL-2, complete genome79.9326 %Subject ←→ Query31.019
NC_007576:1854136*Lactobacillus sakei subsp. sakei 23K, complete genome77.837 %Subject ←→ Query31.3415
NC_012691:2050957*Tolumonas auensis DSM 9187, complete genome75.0919 %Subject ←→ Query31.4446
NC_006512:728281*Idiomarina loihiensis L2TR, complete genome76.4491 %Subject ←→ Query31.7437
NC_008149:1842500*Yersinia pestis Nepal516, complete genome75.0306 %Subject ←→ Query32.1465
NC_007576:1747662*Lactobacillus sakei subsp. sakei 23K, complete genome77.4142 %Subject ←→ Query32.1833
NC_008800:1090000*Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,75.5116 %Subject ←→ Query32.2532
NC_014554:1019730Lactobacillus plantarum subsp. plantarum ST-III chromosome,76.3143 %Subject ←→ Query32.3869
NC_003143:2433190*Yersinia pestis CO92, complete genome75.1501 %Subject ←→ Query32.42
NC_012962:820909Photorhabdus asymbiotica, complete genome75.674 %Subject ←→ Query32.5131
NC_008150:1705152*Yersinia pestis Antiqua, complete genome75.1838 %Subject ←→ Query32.6597
NC_005126:2063667Photorhabdus luminescens subsp. laumondii TTO1, complete genome75.6005 %Subject ←→ Query33.1955
NC_013198:1921500*Lactobacillus rhamnosus GG, complete genome77.7574 %Subject ←→ Query33.277
NC_009708:3411153Yersinia pseudotuberculosis IP 31758 chromosome, complete genome75.0429 %Subject ←→ Query33.7395
NC_013421:1819036Pectobacterium wasabiae WPP163, complete genome75.3646 %Subject ←→ Query34.0279
NC_015572:1421782Methylomonas methanica MC09 chromosome, complete genome75.4841 %Subject ←→ Query34.0502
NC_016602:103878*Vibrio furnissii NCTC 11218 chromosome 1, complete sequence76.2102 %Subject ←→ Query34.1136
NC_013166:82986Kangiella koreensis DSM 16069, complete genome77.1967 %Subject ←→ Query34.1481
NC_016445:2663837Vibrio cholerae O1 str. 2010EL-1786 chromosome 1, complete75.8946 %Subject ←→ Query34.4467
NC_008800:2127918*Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,76.633 %Subject ←→ Query34.4723
NC_013199:1886271*Lactobacillus rhamnosus Lc 705, complete genome76.8995 %Subject ←→ Query35.0179
NC_008497:1498430*Lactobacillus brevis ATCC 367, complete genome78.8603 %Subject ←→ Query35.4937
NC_012668:368305*Vibrio cholerae MJ-1236 chromosome 1, complete sequence75.8058 %Subject ←→ Query35.5397
NC_016944:238580*Vibrio cholerae IEC224 chromosome I, complete sequence76.2653 %Subject ←→ Query35.8534
NC_012582:272320Vibrio cholerae O395 chromosome chromosome I, complete sequence76.1642 %Subject ←→ Query36.1945
NC_004547:3207776*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.2911 %Subject ←→ Query36.2193
NC_014624:2297000*Eubacterium limosum KIST612 chromosome, complete genome76.5717 %Subject ←→ Query36.3272
NC_006371:1411335Photobacterium profundum SS9 chromosome 2, complete sequence76.7218 %Subject ←→ Query36.8555
NC_015428:823420*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome78.9645 %Subject ←→ Query37.54
NC_013008:3761467Escherichia coli O157:H7 str. TW14359 chromosome, complete genome75.3707 %Subject ←→ Query37.6158
NC_010159:1288000Yersinia pestis Angola, complete genome75.723 %Subject ←→ Query37.7291
NC_013421:1696746*Pectobacterium wasabiae WPP163, complete genome75.4105 %Subject ←→ Query37.8565
NC_013198:813830*Lactobacillus rhamnosus GG, complete genome75.5086 %Subject ←→ Query37.9547
NC_011741:4570498*Escherichia coli IAI1 chromosome, complete genome75.242 %Subject ←→ Query38.0654
NC_006155:1191307Yersinia pseudotuberculosis IP 32953, complete genome75.1808 %Subject ←→ Query38.0676
NC_005810:872672Yersinia pestis biovar Microtus str. 91001, complete genome75.0306 %Subject ←→ Query38.2167
NC_013008:3525428*Escherichia coli O157:H7 str. TW14359 chromosome, complete genome75.0919 %Subject ←→ Query38.339
NC_013730:2359939Spirosoma linguale DSM 74, complete genome75.2237 %Subject ←→ Query38.4788
NC_010634:4463727Yersinia pseudotuberculosis PB1/+, complete genome75.0245 %Subject ←→ Query38.8379
NC_015428:700479*Lactobacillus buchneri NRRL B-30929 chromosome, complete genome76.921 %Subject ←→ Query38.8838
CU928160:4570498*Escherichia coli IAI1 chromosome, complete genome75.242 %Subject Query43.1129
NC_002655:3769643*Escherichia coli O157:H7 EDL933, complete genome75.3278 %Subject Query43.1795
NC_011751:3285646*Escherichia coli UMN026 chromosome, complete genome75.7108 %Subject Query43.64
NC_002695:3702344*Escherichia coli O157:H7 str. Sakai, complete genome75.3554 %Subject Query43.9329
NC_011353:3805819*Escherichia coli O157:H7 str. EC4115 chromosome, complete genome75.4657 %Subject Query43.9502
NC_012917:1840172*Pectobacterium carotovorum subsp. carotovorum PC1, complete genome75.0092 %Subject Query45.0216
NC_006905:4638707*Salmonella enterica subsp. enterica serovar Choleraesuis str75.5086 %Subject Query45.4121
NC_012214:2221702*Erwinia pyrifoliae Ep1/96, complete genome75.0429 %Subject Query46.3016
NC_014839:253961*Pantoea sp. At-9b plasmid pPAT9B02, complete sequence75.2911 %Subject Query46.3854
NC_004547:1174650*Erwinia carotovora subsp. atroseptica SCRI1043, complete genome75.4902 %Subject Query48.0379
NC_012880:3421500*Dickeya dadantii Ech703, complete genome76.3235 %Subject Query54.2571