Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_013364: Escherichia coli O111:H- str. 11128, complete genome

NCBI: NC_013364

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
111382*3110119720Island text2.1392734.049132.7583Neighbours41BLASTN11382.gbk
2143492*16609922608Island text1.7732131.374628.0668Neighbours41BLASTN+IslandViewer 143492.gbk
386320988715023942Island text1.518137.155831.2856Neighbours51BLASTN+863209.gbk
492848695828429799Island text5.3412342.822120.3204Neighbours41BLASTN+IslandViewer 928486.gbk
51183000120214519146Island text2.1978233.112435.7291Neighbours41BLASTN+IslandViewer 1183000.gbk
61257801128320725407Island text2.3836239.68726.1116Neighbours41BLASTN+IslandViewer 1257801.gbk
71306756132800621251Island text1.9318432.227320.0776Neighbours41BLASTNIslandViewer 1306756.gbk
81477248*152523447987Island text3.0349939.843423.452Neighbours41BLASTN+IslandViewer 1477248.gbk
91596278161907522798Island text1.7592634.951932.6451Neighbours41BLASTN+IslandViewer 1596278.gbk
101902761192531122551Island text2.1419331.98821.8688Neighbours41BLASTN+IslandViewer 1902761.gbk
111997891202353325643Island text2.2104638.523229.7288Neighbours41BLASTN+IslandViewer 1997891.gbk
122355298*239119835901Island text3.6742140.913719.1972Neighbours41BLASTN+IslandViewer 2355298.gbk
132522888255849335606Island text1.509134.931329.3489Neighbours51BLASTNIslandViewer 2522888.gbk
142612822263386221041Island text2.0520333.042715.213Neighbours41BLASTN+IslandViewer 2612822.gbk
152645438266809922662Island text1.5799332.459938.1776Neighbours41BLASTN+IslandViewer 2645438.gbk
162672837270562832792Island text4.2127143.773527.3667Neighbours41BLASTN+IslandViewer 2672837.gbk
172898964292761928656Island text2.3676735.128926.4831Neighbours41BLASTN+IslandViewer 2898964.gbk
183312379333655024172Island text1.5022236.004432.7567Neighbours51BLASTN+IslandViewer 3312379.gbk
193339768336710527338Island text2.6498638.482319.9823Neighbours41BLASTN+IslandViewer 3339768.gbk
203552284359020037917Island text5.2815843.578417.8544Neighbours41BLASTN+IslandViewer 3552284.gbk
213701895*376382661932Island text3.181841.195523.3388Neighbours41BLASTN+IslandViewer 3701895.gbk
223840000386245422455Island text2.1291932.551121.2328Neighbours41BLASTN+IslandViewer 3840000.gbk
234306000432410718108Island text2.2974931.918815.5439Neighbours41BLASTN+4306000.gbk
244460500*448316922670Island text2.7404335.639117.1619Neighbours41BLASTNIslandViewer 4460500.gbk
254990365*500909918735Island text1.6070132.729432.5101Neighbours41BLASTN+IslandViewer 4990365.gbk
265040268506410923842Island text1.5537732.785124.9421Neighbours41BLASTN+5040268.gbk
275083949*511646832520Island text3.2465741.992223.0006Neighbours41BLASTN+IslandViewer 5083949.gbk
285255700528117125472Island text2.1472433.861323.516Neighbours41BLASTN+IslandViewer 5255700.gbk