Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_011745: Escherichia coli ED1a chromosome, complete genome

NCBI: NC_011745

Host Lineage: Escherichia coli; Escherichia; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Isolated in the 2000s from the faeces of a healthy man in France. This organism was named for its discoverer, Theodore Escherich, and is one of the premier model organisms used in the study of bacterial genetics, physiology, and biochemistry. This enteric organism is typically present in the lower intestine of humans, where it is the dominant facultative anaerobe present, but it is only one minor constituent of the complete intestinal microflora. E. coli, is capable of causing various diseases in its host, especially when they acquire virulence traits. E. coli can cause urinary tract infections, neonatal meningitis, and many different intestinal diseases, usually by attaching to the host cell and introducing toxins that disrupt normal cellular processes.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1149594*17316323570Island text1.5731533.025324.8264Neighbours41BLASTN+149594.gbk
225872728209923373Island text1.4711836.423954.4342Neighbours41BLASTN+IslandViewer 258727.gbk
3291422*31581524394Island text1.6595730.082726.7755Neighbours41BLASTN+IslandViewer 291422.gbk
4333061*35636623306Island text2.1997237.619432.8725Neighbours41BLASTN+IslandViewer 333061.gbk
51055354*108082725474Island text1.9066230.216420.9831Neighbours51BLASTN+1055354.gbk
61287714131286125148Island text1.5006536.014433.2466Neighbours41BLASTN+IslandViewer 1287714.gbk
71581907160450522599Island text2.4340635.877517.0845Neighbours41BLASTN+IslandViewer 1581907.gbk
82025725204991624192Island text1.4708731.164939.2374Neighbours51BLASTN+IslandViewer 2025725.gbk
92168379*219460326225Island text1.5031839.291537.197BLASTN+IslandViewer 2168379.gbk
102209288*227948170194Island text1.5822933.751827.7734Neighbours41BLASTN+IslandViewer 2209288.gbk
112302979233517432196Island text3.0501140.054922.4325Neighbours41BLASTNIslandViewer 2302979.gbk
122399313*242312423812Island text5.9904844.434520.4653Neighbours41BLASTNIslandViewer 2399313.gbk
132751437277159920163Island text1.5113231.183127.9328Neighbours41BLASTN+IslandViewer 2751437.gbk
143197584*322165624073Island text2.3839132.476424.0336Neighbours41BLASTN+IslandViewer 3197584.gbk
153245000326829423295Island text1.5980431.48129.0961Neighbours41BLASTN+IslandViewer 3245000.gbk
163405520342809922580Island text2.0575634.975527.3595Neighbours41BLASTN+IslandViewer 3405520.gbk
173443371*347589032520Island text1.460631.134525.9228BLASTN+IslandViewer 3443371.gbk
183511600353764026041Island text1.7493538.491430.0476Neighbours41BLASTN+IslandViewer 3511600.gbk
193627438365026722830Island text3.1328640.833623.0182Neighbours41BLASTN+3627438.gbk
203992434401654024107Island text1.5383830.879130.4239Neighbours41BLASTN+IslandViewer 3992434.gbk
214226186*425073824553Island text1.9561733.65124.3239Neighbours41BLASTNIslandViewer 4226186.gbk
224862218*489399231775Island text2.5180935.029317.9422Neighbours41BLASTN+IslandViewer 4862218.gbk
235114500514009925600Island text1.8927438.291823.9062Neighbours41BLASTN+IslandViewer 5114500.gbk