Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008600: Bacillus thuringiensis str. Al Hakam, complete genome

NCBI: NC_008600

Host Lineage: Bacillus thuringiensis; Bacillus; Bacillaceae; Bacillales; Firmicutes; Bacteria

General Information: Produces insect toxin. This organism, also known as BT, is famous for the production of an insecticidal toxin. The bacterium was initially discovered as a pathogen of various insects and was first used as an insecticidal agent in the early part of this century. This organism, like many other Bacilli, is found in the soil, where it leads a saprophytic existence, but becomes an opportunistic pathogen of insects when ingested. The specific activity of the toxin towards insects and its lack of toxicity to animals has made this organism a useful biocontrol agent. The delta-endotoxin, which is produced during the sporulation part of the life cycle, causes midgut paralysis and disruption of feeding by the infected insect host. The delta-endotoxin, which is produced during the sporulation part of the life cycle, causes midgut paralysis and disruption of feeding by the infected insect host. The delta-endotoxin, which is produced during the sporulation part of the life cycle, causes midgut paralysis and disruption of feeding by the infected insect host. The presence of a parasporal crystal, which is outside the exosporium of the endospore, is indicative of production of the toxin, and serves as a marker for this species.Activation of the toxin typically requires a high pH environment such as the alkaline environments in insect midguts followed by proteolysis. Various toxin genes specific for a variety of insects have been studied, and many are now being used in genetically modified plants which have been engineered to produce the toxin themselves, eliminating the need to produce sufficient amounts of B. thuringiensis spores.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
11042477*106188519409Island text1.5363123.534831.6878Neighbours21BLASTN+1042477.gbk
21071537109414722611Island text2.6581223.148742.6788Neighbours21BLASTN1071537.gbk
31396471*141511318643Island text1.6241723.044333.6856Neighbours21BLASTN1396471.gbk
42353696*237619322498Island text1.6567725.728223.3806Neighbours21BLASTN+IslandViewer 2353696.gbk
52792584281209919516Island text1.6803523.413230.5762Neighbours21BLASTN2792584.gbk
63488000351431926320Island text1.6946726.749835.8513Neighbours21BLASTN+3488000.gbk
73611038362982518788Island text1.6376123.425333.6947Neighbours21BLASTN+3611038.gbk
83643905*366318919285Island text1.6838124.614530.3554Neighbours21BLASTN3643905.gbk
93686135*370410517971Island text1.9838522.663937.267Neighbours21BLASTN3686135.gbk
103724312*374292718616Island text1.6058923.008922.7677Neighbours21BLASTN+3724312.gbk
113976045399505219008Island text1.5143522.4129.5407Neighbours21BLASTN+3976045.gbk
124101748*412497023223Island text1.6119323.498335.2905Neighbours21BLASTN4101748.gbk
134263505*428734423840Island text1.4930124.677828.0302Neighbours21BLASTNIslandViewer 4263505.gbk
144509793*453559925807Island text1.6696126.439842.8181Neighbours21BLASTN4509793.gbk
154626464464825421791Island text1.5727123.068937.9077Neighbours21BLASTN+4626464.gbk
164687500*471283725338Island text1.5447924.288927.9053Neighbours21BLASTN4687500.gbk
174868000*488698318984Island text1.4833926.690230.8503Neighbours21BLASTN4868000.gbk
184898000*493385035851Island text1.6581323.195235.8476Neighbours21BLASTN+4898000.gbk
195005345502714021796Island text1.8466723.914540.2537Neighbours21BLASTN+5005345.gbk
205046000*510070354704Island text1.5706324.661637.5183Neighbours21BLASTN+5046000.gbk
215113765*513258218818Island text1.9782822.881240.3703Neighbours21BLASTN+5113765.gbk