Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS

NC_008542: Burkholderia cenocepacia HI2424 chromosome 1, complete sequence

NCBI: NC_008542

Host Lineage: Burkholderia cenocepacia; Burkholderia; Burkholderiaceae; Burkholderiales; Proteobacteria; Bacteria

General Information: This organism (HI2424; BCC1) was isolated as part of a study to find this organism in natural environments. Samples taken from fields that were planted with onions in New York in 1999 and 2000 were examined and it was discovered that isolates were the same as ones that can infect CF patients. This species (genomovar III) is part of the Burkholderia cepacia complex, which consists of 9 closely related species, also known as genomovars. These organisms are commonly found in soil and all are opportunistic pathogens espcially in cystic fibrosis patients.

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
119750023947941980Island text2.0011420.431618.6085Neighbours11BLASTN+IslandViewer 197500.gbk
2483761*51469930939Island text2.4454725.104322.4598Neighbours11BLASTN+IslandViewer 483761.gbk
3855347*88974734401Island text2.7966630.226127.5525Neighbours11BLASTN+IslandViewer 855347.gbk
41021848*105088429037Island text2.4296626.415826.8576Neighbours11BLASTN+IslandViewer 1021848.gbk
51727000*174809921100Island text1.8875121.79823.8694Neighbours11BLASTN+IslandViewer 1727000.gbk
62631138*265802226885Island text2.4998528.50728.7199Neighbours11BLASTN+IslandViewer 2631138.gbk