Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_008148: Rubrobacter xylanophilus DSM 9941, complete genome

NCBI: NC_008148

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
125829227779419503Island text2.0868917.850228.2952Neighbours11BLASTN258292.gbk
258303060960026571Island text6.2571328.574640.6948Neighbours11BLASTN+IslandViewer 583030.gbk
367260869241419807Island text1.7312217.325815.7612Neighbours11BLASTN+672608.gbk
479261081163719028Island text1.8377516.755824.9787Neighbours11BLASTN792610.gbk
51567703*159210324401Island text3.8589523.187823.9025Neighbours11BLASTN+IslandViewer 1567703.gbk
61711679173196220284Island text3.5642516.61621.2693Neighbours11BLASTN1711679.gbk
71859888192073060843Island text4.5417120.14920.1061Neighbours11BLASTN+IslandViewer 1859888.gbk
82053467*207149018024Island text2.7791216.84125.606Neighbours11BLASTN+IslandViewer 2053467.gbk
92156873*217729320421Island text1.6871416.971728.3835Neighbours11BLASTN2156873.gbk
102231045228514954105Island text4.3222819.363916.838Neighbours11BLASTN+IslandViewer 2231045.gbk
112290806*231729826493Island text2.0891319.792925.1031Neighbours11BLASTN+IslandViewer 2290806.gbk
122498000255085152852Island text7.6691234.613930.3944Neighbours11BLASTN+IslandViewer 2498000.gbk
133024867304671521849Island text4.0760517.846824.0134Neighbours11BLASTN+IslandViewer 3024867.gbk