Pre_GI: BLASTN Hits

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Query: NC_008148:2290806 Rubrobacter xylanophilus DSM 9941, complete genome

Start: 2290806, End: 2317298, Length: 26493

Host Lineage: Rubrobacter xylanophilus; Rubrobacter; Rubrobacteraceae; Rubrobacterales; Actinobacteria; Bacteria

General Information: Cellulose-degrading bacterium. This genus contains two species: Rubrobacter radiotolerans and Rubrobacter xylanophilus. These two species represent the oldest lineage (deepest branch) of the Actinobacteria and are distantly related to Mycobacteria and Streptomycetes. Both species are thermophilic and exhibit high tolerance to radiation. Very little research has been done on these organisms and little is known other than their taxonomic characterization. Rubrobacter xylanophilus was isolated from a thermally polluted industrial runoff in the United Kingdom. Some strains of this species are capable of degrading hemicellulose and xylan (polymers of plant origin), and could play a significant role in the degradation of these compounds in the wood and paper industry as well as in the environment.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008148:18598881859888192073060843Rubrobacter xylanophilus DSM 9941, complete genome1e-162581BLASTN svgBLASTP svg
NC_008148:24980002498000255085152852Rubrobacter xylanophilus DSM 9941, complete genome6e-125456BLASTN svgBLASTP svg
NC_008148:25829225829227779419503Rubrobacter xylanophilus DSM 9941, complete genome2e-84321BLASTN svgBLASTP svg
NC_008711:3701635*3701635372498023346Arthrobacter aurescens TC1, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_018524:444217*44421747409929883Nocardiopsis alba ATCC BAA-2165 chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_015563:26566282656628268487728250Delftia sp. Cs1-4 chromosome, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_015138:22991002299100232415125052Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete2e-1385.7BLASTN svgBLASTP svg
NC_013521:4240468*4240468426799927532Sanguibacter keddieii DSM 10542, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013530:3365742*3365742338937923638Xylanimonas cellulosilytica DSM 15894, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015588:2939747*2939747296269722951Isoptericola variabilis 225 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_007908:1328832*1328832136532136490Rhodoferax ferrireducens T118, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_018868:1352000*1352000138222930230Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_011959:972798*97279899909326296Thermomicrobium roseum DSM 5159, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_008686:405159*40515944047735319Paracoccus denitrificans PD1222 chromosome 1, complete sequence1e-0869.9BLASTN svgBLASTP svg
NC_006087:345976*34597640567959704Leifsonia xyli subsp. xyli str. CTCB07, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010725:4618000*4618000464104723048Methylobacterium populi BJ001, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_013757:1544348*1544348158219937852Geodermatophilus obscurus DSM 43160, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_018750:26687832668783269022121439Streptomyces venezuelae ATCC 10712, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_007164:622000*62200065646734468Corynebacterium jeikeium K411, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010572:3925803*3925803395628730485Streptomyces griseus subsp. griseus NBRC 13350, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013235:13259751325975134970523731Nakamurella multipartita DSM 44233, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_014909:662500*66250068970227203Candidatus Blochmannia vafer str. BVAF chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015711:7601733*7601733762447622744Myxococcus fulvus HW-1 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015957:10403997*104039971042720123205Streptomyces violaceusniger Tu 4113 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018750:3661243*3661243368475823516Streptomyces venezuelae ATCC 10712, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_021177:3598700*3598700361863819939Streptomyces fulvissimus DSM 40593, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007513:1900000*1900000192383823839Synechococcus sp. CC9902, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_014377:53281653281655737924564Thermosediminibacter oceani DSM 16646 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015589:3085442*3085442310809922658Desulfotomaculum ruminis DSM 2154 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015953:47469834746983477386726885Streptomyces sp. SirexAA-E chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013947:613774*61377463382720054Stackebrandtia nassauensis DSM 44728 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013526:10340351034035105612622092Thermobaculum terrenum ATCC BAA-798 chromosome 2, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013222:3060482*3060482308509924618Robiginitalea biformata HTCC2501, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010505:4676403*4676403470458628184Methylobacterium radiotolerans JCM 2831, complete genome3e-0661.9BLASTN svgBLASTP svg