Pre_GI Island

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n1_4mer:GRV/n1_4mer:RV = (Global Relative Variance of OU patterns) / (Local Relative Variance of OU patterns)

n0_4mer:D = Distance between local and global OU patterns

n0_4mer:PS = Distance between 2 strands of same DNA molecule

Selected loci indicated by large D, increased GRV associated with decreased RV and moderate increase in PS




NC_003902: Xanthomonas campestris pv. campestris str. ATCC 33913, complete

NCBI: NC_003902

Host Lineage: Xanthomonas campestris; Xanthomonas; Xanthomonadaceae; Xanthomonadales; Proteobacteria; Bacteria

General Information: This strain was originally isolated from cabbage. Causes black rot disease in crucifers. This genus consists of plant-specific yellow-pigmented microbes, some of which are economically important phytopathogens that devastate crops such as citrus plants, rice, beans, grape, and cotton. These organisms are almost exclusively found associated with their plant hosts and are not found free in the soil. This species is a major cause of black rot in crucifers, a disease that results in massive tissue degeneration. It also produces an extracellular polysaccharide known as xanthan, which is harvested commercially as a food stabilizing agent for use in industry.



Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

#StartEndLengthIsland TextGRV_RVDPSNeighboursClusterSub ClusterBLASTNKey Word ConfirmationOther DB ConfirmationDownload Island
1714949265421161Island text1.8958922.432126.9567Neighbours11BLASTNIslandViewer 71494.gbk
215562718258326957Island text1.9980924.541925.3327Neighbours11BLASTN+IslandViewer 155627.gbk
339600042428128282Island text2.0347626.133535.4821Neighbours11BLASTN+IslandViewer 396000.gbk
4461808*48465722850Island text1.6477120.798916.7903Neighbours11BLASTN+IslandViewer 461808.gbk
5555699*58306027362Island text1.9590325.628923.6471Neighbours11BLASTN555699.gbk
662482864848923662Island text1.5590226.465221.5556Neighbours11BLASTNIslandViewer 624828.gbk
771447874861534138Island text1.9673824.378924.9459Neighbours11BLASTN+IslandViewer 714478.gbk
81220600124640025801Island text1.6846721.605324.601Neighbours11BLASTNIslandViewer 1220600.gbk
91416000143821122212Island text1.4748719.430919.1071Neighbours11BLASTNIslandViewer PAI DB1416000.gbk
101442705146464821944Island text1.7884119.893713.6024Neighbours11BLASTN+IslandViewer PAI DB1442705.gbk
111680414171409933686Island text1.9880826.655325.8265Neighbours11BLASTN+IslandViewer 1680414.gbk
121858349*191581657468Island text2.2004426.632722.39Neighbours11BLASTN+IslandViewer 1858349.gbk
132211790*223409922310Island text1.5065522.920720.4775Neighbours11BLASTN+IslandViewer 2211790.gbk
142469500*250580636307Island text2.6093527.860825.4121Neighbours11BLASTN+IslandViewer 2469500.gbk
152903493*292609922607Island text1.4687621.838541.96Neighbours11BLASTN2903493.gbk
162933121295986926749Island text1.6407218.707429.5225Neighbours11BLASTN+IslandViewer 2933121.gbk
173430051345076420714Island text1.6716418.099523.8701Neighbours11BLASTN+IslandViewer 3430051.gbk
183514000353798123982Island text1.5491622.811322.1282Neighbours11BLASTN+IslandViewer 3514000.gbk
193544743*356478520043Island text1.6262219.95523.4633Neighbours11BLASTN+3544743.gbk
203666544*374180275259Island text2.3241424.617622.7457Neighbours11BLASTN+IslandViewer 3666544.gbk
213906011393272426714Island text1.9762622.134128.4772Neighbours11BLASTN+IslandViewer 3906011.gbk
224111283413441223130Island text1.5118718.604126.4892Neighbours11BLASTN+IslandViewer 4111283.gbk
234252000427283320834Island text1.7507219.840316.8279Neighbours11BLASTN+IslandViewer 4252000.gbk
244430621*444960618986Island text1.6803217.49316.5489Neighbours11BLASTN+IslandViewer 4430621.gbk
254989855501656626712Island text1.9522721.819920.0616Neighbours11BLASTN+4989855.gbk