Pre_GI Gene

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Host: NC_013716 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_013716:5141269 Citrobacter rodentium ICC168, complete genome

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
514126951423331065hypothetical proteinBLASTP
51425175142819303hypothetical proteinBLASTP
5142862514294584tRNA-LeuQuickGO ontologyBLASTP
5142981514306484tRNA-LeuQuickGO ontologyBLASTP
5143096514317984tRNA-LeuQuickGO ontologyBLASTP
514338651444141029ribosomal RNA small subunit methyltransferase CQuickGO ontologyBLASTP
51446285145041414DNA polymerase III psi subunitQuickGO ontologyBLASTP
51450105145456447ribosomal-protein-alanine acetyltransferaseQuickGO ontologyBLASTP
514547151461486785-nucleotidase nucleoside 5-monophosphate phosphohydrolaseQuickGO ontologyBLASTP
51467645147576813ISEc14 transposase BQuickGO ontologyBLASTP
51476155147899285ISEc14 transposase AQuickGO ontologyBLASTP
51479615148674714BLASTP
51486775149078402IS3 family transposase AQuickGO ontologyBLASTP
51495695149736168hypothetical protein
51503215151082762hypothetical proteinBLASTP
51510905151431342hypothetical proteinBLASTP
51514675151724258hypothetical proteinBLASTP
51525495153430882T3SS effector protein NleHQuickGO ontologyBLASTP
51534875154065579T3SS effector protein NleFQuickGO ontologyBLASTP
51541105154358249hypothetical protein
51544305155059630putative T3SS effector protein NleG7QuickGO ontologyBLASTP
51558885156541654T3SS effector protein EspJQuickGO ontologyBLASTP
515900751605931587peptide chain release factor 3QuickGO ontologyBLASTP
51605905160709120hypothetical protein
51610005161617618osmotically-inducible protein YQuickGO ontologyBLASTP
51617455161906162hypothetical protein
516203051631031074patatin-like phospholipaseQuickGO ontologyBLASTP
51631005163876777putative deoxyribonucleaseQuickGO ontologyBLASTP
51639085164771864radical SAM superfamily proteinQuickGO ontologyBLASTP
516474351662931551hypothetical proteinBLASTP
51665555167334780deoxyribose-phosphate aldolaseQuickGO ontologyBLASTP
516749151688131323thymidine phosphorylaseQuickGO ontologyBLASTP
516886551700881224phosphopentomutaseQuickGO ontologyBLASTP