Pre_GI: BLASTP Hits

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Query: NC_013716:5141269:5152549 Citrobacter rodentium ICC168, complete genome

Start: 5152549, End: 5153430, Length: 882

Host Lineage: Citrobacter rodentium; Citrobacter; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Citrobacter rodentium is the causative agent of transmissible murine colonic hyperplasia in mice. This disease is characterized by a hyperproliferation of the epithelial cells in the colon similar to that found in humans suffering from idiopathic inflammatory bowel disease. In addition this organism contains virulence factors similar to those found in enterohemorrhagic Escherichia coli and enteropathogenic E. coli. C. rodentium are being used as models for studying mucosal response to infection, colon tumor production, and virulence associated with pathogenic E. coli.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013364:863209:882149882149883030882Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector NleH6e-147520
NC_011601:756885:767656767656768537882Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleH-like protein5e-146516
NC_013353:867869:876081876081876962882Escherichia coli O103:H2 str. 12009, complete genomeT3SS effector NleH2e-145514
AP010958:867869:876081876081876962882Escherichia coli O103:H2 str. 12009 DNA, complete genomeT3SS secreted effector NleH-homolog2e-145514
NC_002655:2264773:228157322815732282484912Escherichia coli O157:H7 EDL933, complete genomehypothetical protein8e-145513
NC_002695:1794635:180469318046931805604912Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein8e-145513
NC_011353:1716037:172628417262841727195912Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenon-LEE-encoded effector NleH8e-145513
NC_011601:1466496:147672414767241477635912Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomeT3SS secreted effector NleH-like protein8e-145513
NC_013008:1715831:172525917252591726170912Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector8e-145513
NC_013361:1754346:176626017662601767171912Escherichia coli O26:H11 str. 11368 chromosome, complete genomeT3SS effector NleH8e-145513
NC_013364:1997891:200969620096962010607912Escherichia coli O111:H- str. 11128, complete genomeT3SS secreted effector NleH-like protein8e-145513
NC_013941:1613595:162381316238131624724912Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeNon-LEE-encoded type III effector H8e-145513
NC_002695:917509:927482927482928363882Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein5e-144510
NC_002655:919654:929133929133930014882Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by prophage CP-933K5e-144510
NC_013941:1014386:102451210245121025393882Escherichia coli O55:H7 str. CB9615 chromosome, complete genomenon-LEE-encoded type III effector H5e-144510
NC_013008:918215:932440932440933321882Escherichia coli O157:H7 str. TW14359 chromosome, complete genomenon-LEE-encoded type III effector6e-144509
NC_011353:921500:930847930847931728882Escherichia coli O157:H7 str. EC4115 chromosome, complete genomenon-LEE-encoded effector NleH6e-144509
NC_013353:2272919:228414922841492284745597Escherichia coli O103:H2 str. 12009, complete genome4e-76285
AP010958:2272919:228414922841492284745597Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-76285
NC_011601:1077548:108744110874411087614174Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome1e-20100
NC_009705:78000:825518255183390840Yersinia pseudotuberculosis IP 31758 plasmid_153kb, completehypothetical protein6e-1271.6
NC_015224:4101939:4118311411831141210612751Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,hypothetical protein1e-1170.9
NC_013353:1472506:148999114899911490575585Escherichia coli O103:H2 str. 12009, complete genome6e-0858.5
AP010958:1472506:148999114899911490575585Escherichia coli O103:H2 str. 12009 DNA, complete genome6e-0858.5
NC_013008:1761165:178010017801001780690591Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein6e-0858.5
NC_011353:1761977:178112417811241781714591Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeOspG6e-0858.5
NC_013353:2272919:228481322848132284938126Escherichia coli O103:H2 str. 12009, complete genome2e-0756.6
AP010958:2272919:228481322848132284938126Escherichia coli O103:H2 str. 12009 DNA, complete genome2e-0756.6